Prupe.3G104200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000220
Physical Location & Seq
Reverse (-)
8215747 .. 8216076
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G104200.1

Sequence Viewer

Length: 330 bp
ATGGCAAGTAGTAGTGGACCAAGTGGAGCTAGTGTGCCTGGTGGTCTTGATGTGGCATGGAAATATGCTCGTCTAATAGAAGGCAATAAGCATGGCACCATATGCACATTTTGTGAATCCACATTTAAAAGTGGTGGAATTACACGGTTAAAGTATCATTTAGCTAGATTTGATCCACATAAGAGTGTAAAGAAGTGCAAAGAAGTACCGCTAGATATTAAGAAGGAGGTAATTGCATGGATAAAGGAGAAAGAGTCTAGCAAACAACATAAGAAATCTGCTGAAGATAAACACAAGATCTACAACAAGAGGGGGATACATGGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

110

Amino Acids

12.15

Weight (kDa)

9.74

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 29, 164
AluI AGCT 2 cut(s) 29, 164
AlwI GGATC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 309
BfaI CTAG 4 cut(s) 30, 165, 212, 258
BfuI GTATCC 1 cut(s) 309
BglII AGATCT 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 239, 269
BseBI CCWGG 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 172, 297
BspACI CCGC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 95
BssMI GATC 2 cut(s) 172, 297
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 175, 300
BstMBI GATC 2 cut(s) 172, 297
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 206
CviAII CATG 4 cut(s) 57, 92, 237, 320
CviJI RGCY 2 cut(s) 29, 164
CviKI_1 RGCY 2 cut(s) 29, 164
CviQI GTAC 1 cut(s) 206
DpnI GATC 2 cut(s) 174, 299
DpnII GATC 2 cut(s) 172, 297
DraI TTTAAA 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 4 cut(s) 60, 95, 240, 323
FaiI YATR 9 cut(s) 58, 66, 93, 101, 103, 180, 238, 270, 321
FatI CATG 4 cut(s) 56, 91, 236, 319
FauNDI CATATG 1 cut(s) 101
FspBI CTAG 4 cut(s) 30, 165, 212, 258
Hin1II CATG 4 cut(s) 60, 95, 240, 323
HinfI GANTC 2 cut(s) 116, 254
Hpy166II GTNNAC 1 cut(s) 17
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 74, 217
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 105, 198, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 60, 95, 240, 323
Kzo9I GATC 2 cut(s) 172, 297
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 2 cut(s) 24, 51
MaeI CTAG 4 cut(s) 30, 165, 212, 258
MalI GATC 2 cut(s) 174, 299
MboI GATC 2 cut(s) 172, 297
MboII GAAGA 1 cut(s) 296
MflI RGATCY 1 cut(s) 297
MluCI AATT 2 cut(s) 138, 231
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 2 cut(s) 220, 303
MseI TTAA 3 cut(s) 126, 149, 219
MslI CAYNNNNRTG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeI CATATG 1 cut(s) 101
NdeII GATC 2 cut(s) 172, 297
NlaIII CATG 4 cut(s) 60, 95, 240, 323
NlaIV GGNNCC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 116
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 3 cut(s) 126, 149, 219
Sau3AI GATC 2 cut(s) 172, 297
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 39
SetI ASST 3 cut(s) 31, 166, 231
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 2 cut(s) 138, 231
SsiI CCGC 1 cut(s) 209
SspMI CTAG 4 cut(s) 30, 165, 212, 258
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 147
TasI AATT 2 cut(s) 138, 231
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 3 cut(s) 126, 149, 219
Tru9I TTAA 3 cut(s) 126, 149, 219
VpaK11BI GGWCC 1 cut(s) 17
XspI CTAG 4 cut(s) 30, 165, 212, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.