Rh2BG114900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000220
Physical Location & Seq
Forward (+)
9730824 .. 9731239
416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG114900.1

Sequence Viewer

Length: 351 bp
ATGACGACAAAACGTGGAGGAGGCATACTTGCTGAGGTTGGTGGGGATGGGGTTCTGGTTGACCGAATCTGGCATGGAGGAATACCAATTGGCAATGATGATGGATCTGCTCTCTATCCGATGATCTGTATCGGGGAAGGCTATGGTAGAGGTCGGGGGTCCGATCTAAGCTTGGTGGTGGTTGTGTTGTGCGTCTCTGATCGGGTTCGTCCCGAACTAGGGACTGATTTCTTCATTGCTTACGACGGAGCTCCTCCTTGGGAAGTAGATGCGGTTGAAGGGCAGGAAATTGATACTTTGATGGCGGTGTCGTCCAACATCGAGGCGCTCTGGATCCCGGATGCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.19

Weight (kDa)

4.12

Isoelectric Point (pI)

27.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 272, 305
AclWI GGATC 3 cut(s) 112, 328, 341
AfiI CCNNNNNNNGG 3 cut(s) 218, 219, 344
AgsI TTSAA 1 cut(s) 278
AluBI AGCT 2 cut(s) 171, 251
AluI AGCT 2 cut(s) 171, 251
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 3 cut(s) 112, 328, 341
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 159
BamHI GGATCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 33
BccI CCATC 3 cut(s) 41, 95, 295
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 160, 335
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 259, 331
Bpu10I CCTNAGC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 219, 344
Bse3DI GCAATG 2 cut(s) 100, 234
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 2 cut(s) 52, 346
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 3 cut(s) 218, 219, 344
BseMI GCAATG 2 cut(s) 100, 234
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 2 cut(s) 33, 243
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 2 cut(s) 195, 235
BslI CCNNNNNNNGG 3 cut(s) 218, 219, 344
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 195, 235
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 5 cut(s) 104, 123, 163, 199, 333
BspACI CCGC 2 cut(s) 272, 305
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 160, 335
BspPI GGATC 3 cut(s) 112, 328, 341
BsrDI GCAATG 2 cut(s) 100, 234
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 5 cut(s) 104, 123, 163, 199, 333
BssT1I CCWWGG 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 33, 167
BstF5I GGATG 2 cut(s) 52, 346
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 5 cut(s) 107, 126, 166, 202, 336
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 5 cut(s) 104, 123, 163, 199, 333
BstSCI CCNGG 1 cut(s) 336
BstX2I RGATCY 2 cut(s) 104, 333
BstYI RGATCY 2 cut(s) 104, 333
BtsCI GGATG 2 cut(s) 52, 346
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 1 cut(s) 181
CviAII CATG 1 cut(s) 74
CviJI RGCY 3 cut(s) 141, 171, 251
CviKI_1 RGCY 3 cut(s) 141, 171, 251
DdeI CTNAG 2 cut(s) 33, 167
DpnI GATC 5 cut(s) 106, 125, 165, 201, 335
DpnII GATC 5 cut(s) 104, 123, 163, 199, 333
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 1 cut(s) 77
FaiI YATR 3 cut(s) 26, 75, 144
FaqI GGGAC 2 cut(s) 195, 235
FatI CATG 1 cut(s) 73
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 253
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 329
HapII CCGG 1 cut(s) 338
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 328
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 120, 163, 199
Hpy188III TCNNGA 2 cut(s) 212, 331
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 131, 272
HpyCH4IV ACGT 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 33, 167
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 5 cut(s) 104, 123, 163, 199, 333
LmnI GCTCC 2 cut(s) 248, 256
LpnPI CCDG 5 cut(s) 41, 55, 269, 316, 330
LweI GCATC 2 cut(s) 259, 331
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 13
MalI GATC 5 cut(s) 106, 125, 165, 201, 335
MboI GATC 5 cut(s) 104, 123, 163, 199, 333
MboII GAAGA 1 cut(s) 223
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 2 cut(s) 104, 333
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 87, 288
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 7 cut(s) 11, 14, 28, 71, 143, 264, 316
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 338
MunI CAATTG 1 cut(s) 87
NciI CCSGG 1 cut(s) 338
NdeII GATC 5 cut(s) 104, 123, 163, 199, 333
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 160, 335
PfeI GAWTC 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 160, 335
PspPI GGNCC 1 cut(s) 159
PsuI RGATCY 2 cut(s) 104, 333
SacI GAGCTC 1 cut(s) 253
Sau3AI GATC 5 cut(s) 104, 123, 163, 199, 333
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 253
SetI ASST 5 cut(s) 16, 39, 154, 173, 253
SfaNI GCATC 2 cut(s) 259, 331
SinI GGWCC 1 cut(s) 159
Sse9I AATT 2 cut(s) 87, 288
SsiI CCGC 2 cut(s) 272, 305
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 257
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 321
TaqII GACCGA 1 cut(s) 78
TasI AATT 2 cut(s) 87, 288
TfiI GAWTC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 159
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.