pycom08g00120

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000220
Physical Location & Seq
Forward (+)
136730 .. 137542
813 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00120.1

Sequence Viewer

Length: 813 bp
ATGAGACGGGGAGCAAGTGTTAGAGAATCACAACCAACACCACCAATAGCCCCAAGTTTATATAAGTCATCCAAAGCACGTCAAAAGAGTGTTTGGAGTTATTTCACTGGAGGTAATGTGAAAGAGGGAATGGGGTGTCTAATTAGCAAGTTCTTTATCTATGAAAATGTCCTTGCTAAGAAGGCATCATCACATCATTTCAAAAATATGGTATTAGGATGTCAACAGGCCGGTGTTGGAGTACAACCTCCCACTCCCTATGAGGTAAGAAACAAATATTTGGAAATGGAGTATAAAGACATTGGCGAGTATGTTAACAAGTTGAGGTCAAAATGGGAAACTAATGGTTGCACAATCATGTGTGACAGATGGACTGGCCCGACCAGATTGTCTATCATAAACTTCATGGTATACTTCAAGGGAAAGACAATTTTTTTGAAGTCCATTGATGCTTTAGACCATATAAAGAACTACAAGTATATTTACAAATTATTGAGGGATGTAATCATGGAGGTGGGAGAGCATAATGTTGTCCAAGTCGTGACCGACAACGGTTCTGCATTTGTCAAAGCTAGAAAAAAGTTAATGAAGCATCATAATGTGTTTTGGACATCATGTGCAGCACATTGTATTGATCTCATGTTTGAGGCAATGGGGAAGAAAGAGAATATTGCTAATGTCGTAAAAAGAGCTAGAACAATCACAAATTATATTTACAATCAAAGTTGGTTGTTGGCAAAATGCGTGAATTTTGTAAAGGAGAAATTATTCGTCCAGCTACCACTCGATTCGCCACCAACTATATTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

271

Amino Acids

31.02

Weight (kDa)

9.63

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 84 - 234 1.8e-50 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 411
AcsI RAATTY 1 cut(s) 748
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 3 cut(s) 202, 418, 439
AjiI CACGTC 1 cut(s) 80
AluBI AGCT 3 cut(s) 572, 692, 778
AluI AGCT 3 cut(s) 572, 692, 778
AoxI GGCC 2 cut(s) 228, 376
ApeKI GCWGC 1 cut(s) 620
ApoI RAATTY 1 cut(s) 748
ArsI GACNNNNNNTTYG 2 cut(s) 418, 450
Asp700I GAANNNNTTC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 632
BccI CCATC 1 cut(s) 363
BfaI CTAG 2 cut(s) 573, 693
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 377
BmsI GCATC 3 cut(s) 194, 439, 601
BpmI CTGGAG 1 cut(s) 129
BsaXI ACNNNNNCTCC 3 cut(s) 33, 102, 132
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 112, 379
Bse3DI GCAATG 1 cut(s) 657
BseGI GGATG 3 cut(s) 68, 224, 505
BseMI GCAATG 1 cut(s) 657
BseNI ACTGG 2 cut(s) 112, 379
BseXI GCAGC 1 cut(s) 632
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 230, 378
BsiSI CCGG 1 cut(s) 231
BsnI GGCC 2 cut(s) 230, 378
Bsp143I GATC 1 cut(s) 634
BspANI GGCC 2 cut(s) 230, 378
BsrDI GCAATG 1 cut(s) 657
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 2 cut(s) 112, 379
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 1 cut(s) 634
BssNAI GTATAC 1 cut(s) 412
Bst1107I GTATAC 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 554
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 68, 224, 505
BstKTI GATC 1 cut(s) 637
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 632
BstZ17I GTATAC 1 cut(s) 412
BsuRI GGCC 2 cut(s) 230, 378
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 3 cut(s) 68, 224, 505
BtsIMutI CAGTG 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 242
CviAII CATG 5 cut(s) 358, 406, 508, 615, 640
CviJI RGCY 6 cut(s) 50, 230, 378, 572, 692, 778
CviKI_1 RGCY 6 cut(s) 50, 230, 378, 572, 692, 778
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
FaeI CATG 5 cut(s) 361, 409, 511, 618, 643
FatI CATG 5 cut(s) 357, 405, 507, 614, 639
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 3 cut(s) 55, 231, 512
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 2 cut(s) 573, 693
GluI GCNGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 230, 378
HapII CCGG 1 cut(s) 231
Hin1II CATG 5 cut(s) 361, 409, 511, 618, 643
HincII GTYRAC 2 cut(s) 224, 316
HindII GTYRAC 2 cut(s) 224, 316
HinfI GANTC 2 cut(s) 26, 788
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 3 cut(s) 224, 316, 412
Hpy188III TCNNGA 1 cut(s) 541
Hpy8I GTNNAC 3 cut(s) 224, 316, 412
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 351, 560, 620, 808
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 5 cut(s) 361, 409, 511, 618, 643
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 634
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 93, 212, 244, 360, 397, 788
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 3 cut(s) 194, 439, 601
MaeI CTAG 2 cut(s) 573, 693
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 362, 541
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 1 cut(s) 670
MluCI AATT 6 cut(s) 141, 429, 488, 706, 748, 764
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 8 cut(s) 104, 118, 256, 258, 318, 489, 505, 640
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 3 cut(s) 315, 584, 811
MslI CAYNNNNRTG 3 cut(s) 356, 512, 597
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 634
NlaIII CATG 5 cut(s) 361, 409, 511, 618, 643
NmuCI GTSAC 2 cut(s) 362, 541
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 2 cut(s) 26, 788
PkrI GCNGC 1 cut(s) 622
PspPI GGNCC 1 cut(s) 377
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 3 cut(s) 356, 512, 597
SaqAI TTAA 3 cut(s) 315, 584, 811
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 1 cut(s) 377
SetI ASST 9 cut(s) 82, 115, 250, 267, 329, 516, 574, 694, 780
SfaNI GCATC 3 cut(s) 194, 439, 601
SmiMI CAYNNNNRTG 3 cut(s) 356, 512, 597
Sse9I AATT 6 cut(s) 141, 429, 488, 706, 748, 764
SspI AATATT 2 cut(s) 278, 670
SspMI CTAG 2 cut(s) 573, 693
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 786
TaqII GACCGA 1 cut(s) 560
TasI AATT 6 cut(s) 141, 429, 488, 706, 748, 764
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 2 cut(s) 26, 788
Tru1I TTAA 3 cut(s) 315, 584, 811
Tru9I TTAA 3 cut(s) 315, 584, 811
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 362, 541
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 2 cut(s) 362, 541
TspDTI ATGAA 3 cut(s) 177, 394, 602
TspRI CASTG 1 cut(s) 112
XapI RAATTY 1 cut(s) 748
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 2 cut(s) 573, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.