Rmu_sc0009840.1_g000007

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009840.1
OG0000220
Physical Location & Seq
Reverse (-)
37538 .. 38326
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009840.1_g000007.1.cds

Sequence Viewer

Length: 789 bp
atgaagctgcggctacgagataaacagacaaagaataatgtggtcaatgaaaacaactatatagatctacttcatgttgcaagcgagccgctttataatggcattgatctacttcatgattggattatgcctgcacacctcgatgatgaagttggaagacctcttccacaagttgtagaaactgcagctaatgctggaatcaacgtagagagagtcttatttgaagaagttgttaaaaacccagaagataattcagatagtgatgatgcgtggggtggtacaacaactccagatagttctgatgatggtggggagggtggaaacggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatggagaattccaattttcctgtgaaggtaattttgatcatgccacccaaggtgaagaccacggagtgagaacagctggtcatggtgctcaagagaagacccgatatgggaggaggactagaggtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttaggcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacgatcaatttggttatgatgcttatggatataatcaatatggagaagtatatgatcagtcatctagttgggttcatccttattatccccttataggggaaacagtcggcggctctaaagagatctataactatcatgttcatcactacaattcgcactatatgggtcatatgtcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

262

Amino Acids

28.84

Weight (kDa)

4.57

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AciI CCGC 3 cut(s) 10, 89, 720
AclWI GGATC 1 cut(s) 593
AcsI RAATTY 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 439
AfaI GTAC 2 cut(s) 280, 517
AfiI CCNNNNNNNGG 4 cut(s) 480, 704, 705, 706
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 2 cut(s) 224, 537
AluBI AGCT 3 cut(s) 7, 188, 449
AluI AGCT 3 cut(s) 7, 188, 449
Alw21I GWGCWC 1 cut(s) 463
AlwI GGATC 1 cut(s) 593
ApeKI GCWGC 2 cut(s) 7, 185
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 1 cut(s) 579
AsuHPI GGTGA 2 cut(s) 353, 437
BbsI GAAGAC 3 cut(s) 163, 435, 476
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 1 cut(s) 197
BccI CCATC 3 cut(s) 299, 368, 529
BclI TGATCA 3 cut(s) 409, 508, 664
BfaI CTAG 2 cut(s) 492, 675
BfmI CTRYAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 544
BglII AGATCT 2 cut(s) 64, 732
BisI GCNGC 5 cut(s) 8, 11, 89, 186, 721
BlsI GCNGC 5 cut(s) 9, 12, 90, 187, 722
BmsI GCATC 2 cut(s) 256, 619
BpiI GAAGAC 3 cut(s) 163, 435, 476
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 421, 433
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 704, 705, 706
BseDI CCNNGG 2 cut(s) 421, 433
BseGI GGATG 2 cut(s) 379, 685
BseLI CCNNNNNNNGG 4 cut(s) 480, 704, 705, 706
BseRI GAGGAG 1 cut(s) 499
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 463
BslI CCNNNNNNNGG 4 cut(s) 480, 704, 705, 706
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
BspACI CCGC 3 cut(s) 10, 89, 720
BspHI TCATGA 2 cut(s) 115, 601
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 593
BspTI CTTAAG 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 421, 433
BssMI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
BssT1I CCWWGG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 715
Bst6I CTCTTC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 82, 86, 132
BstDEI CTNAG 1 cut(s) 786
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 379, 685
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 8 cut(s) 67, 109, 412, 511, 588, 616, 667, 735
BstMBI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
BstMWI GCNNNNNNNGC 2 cut(s) 191, 576
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 3 cut(s) 163, 435, 476
BstX2I RGATCY 3 cut(s) 64, 585, 732
BstYI RGATCY 3 cut(s) 64, 585, 732
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 2 cut(s) 379, 685
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 3 cut(s) 82, 86, 132
CciI TCATGA 2 cut(s) 115, 601
CfoI GCGC 1 cut(s) 579
Csp6I GTAC 2 cut(s) 279, 516
CviAII CATG 6 cut(s) 74, 116, 413, 455, 602, 746
CviJI RGCY 6 cut(s) 7, 13, 88, 188, 449, 723
CviKI_1 RGCY 6 cut(s) 7, 13, 88, 188, 449, 723
CviQI GTAC 2 cut(s) 279, 516
DdeI CTNAG 1 cut(s) 786
DpnI GATC 8 cut(s) 66, 108, 411, 510, 587, 615, 666, 734
DpnII GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
DraIII CACNNNGTG 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 421
EcoRI GAATTC 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 6 cut(s) 77, 119, 416, 458, 605, 749
FatI CATG 6 cut(s) 73, 115, 412, 454, 601, 745
FauNDI CATATG 1 cut(s) 780
FbaI TGATCA 3 cut(s) 409, 508, 664
Fnu4HI GCNGC 5 cut(s) 8, 11, 89, 186, 721
FokI GGATG 2 cut(s) 386, 672
Fsp4HI GCNGC 5 cut(s) 8, 11, 89, 186, 721
FspBI CTAG 2 cut(s) 492, 675
GlaI GCGC 1 cut(s) 578
GluI GCNGC 5 cut(s) 8, 11, 89, 186, 721
GsuI CTGGAG 1 cut(s) 273
HhaI GCGC 1 cut(s) 579
Hin1II CATG 6 cut(s) 77, 119, 416, 458, 605, 749
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 4 cut(s) 198, 213, 554, 596
HphI GGTGA 2 cut(s) 353, 437
Hpy188I TCNGA 3 cut(s) 256, 301, 526
Hpy188III TCNNGA 4 cut(s) 116, 290, 464, 602
HpyAV CCTTC 2 cut(s) 392, 599
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 80, 134, 185, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 576
HpyF3I CTNAG 1 cut(s) 786
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 6 cut(s) 77, 119, 416, 458, 605, 749
HspAI GCGC 1 cut(s) 577
Ksp22I TGATCA 3 cut(s) 409, 508, 664
Kzo9I GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
LpnPI CCDG 7 cut(s) 144, 180, 255, 303, 315, 406, 435
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 2 cut(s) 256, 619
MaeI CTAG 2 cut(s) 492, 675
MaeII ACGT 1 cut(s) 204
MalI GATC 8 cut(s) 66, 108, 411, 510, 587, 615, 666, 734
MboI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
MboII GAAGA 8 cut(s) 155, 168, 236, 257, 357, 440, 481, 525
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 3 cut(s) 64, 585, 732
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 7 cut(s) 250, 380, 386, 403, 537, 617, 760
MlyI GAGTC 2 cut(s) 222, 548
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 7 cut(s) 149, 171, 307, 332, 477, 480, 488
MseI TTAA 2 cut(s) 234, 545
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 544
MunI CAATTG 1 cut(s) 537
MwoI GCNNNNNNNGC 2 cut(s) 191, 576
NdeI CATATG 1 cut(s) 780
NdeII GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
NlaIII CATG 6 cut(s) 77, 119, 416, 458, 605, 749
PagI TCATGA 2 cut(s) 115, 601
PfeI GAWTC 2 cut(s) 198, 596
PkrI GCNGC 5 cut(s) 9, 12, 90, 187, 722
PleI GAGTC 2 cut(s) 221, 548
PpsI GAGTC 2 cut(s) 221, 548
PsiI TTATAA 1 cut(s) 96
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 3 cut(s) 64, 585, 732
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 280, 517
RsaNI GTAC 2 cut(s) 279, 516
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 234, 545
SatI GCNGC 5 cut(s) 8, 11, 89, 186, 721
Sau3AI GATC 8 cut(s) 64, 106, 409, 508, 585, 613, 664, 732
SchI GAGTC 2 cut(s) 222, 548
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 2 cut(s) 256, 619
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 462, 544
SmoI CTYRAG 2 cut(s) 462, 544
Sse9I AATT 7 cut(s) 250, 380, 386, 403, 537, 617, 760
SsiI CCGC 3 cut(s) 10, 89, 720
SspMI CTAG 2 cut(s) 492, 675
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 715
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 141
TasI AATT 7 cut(s) 250, 380, 386, 403, 537, 617, 760
TauI GCSGC 3 cut(s) 13, 91, 723
TfiI GAWTC 2 cut(s) 198, 596
Tru1I TTAA 2 cut(s) 234, 545
Tru9I TTAA 2 cut(s) 234, 545
TscAI CASTG 1 cut(s) 586
TseI GCWGC 2 cut(s) 7, 185
TspGWI ACGGA 2 cut(s) 339, 450
TspRI CASTG 1 cut(s) 586
Vha464I CTTAAG 1 cut(s) 544
XapI RAATTY 1 cut(s) 380
XspI CTAG 2 cut(s) 492, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.