Rmu_sc0001696.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001696.1
OG0000220
Physical Location & Seq
Forward (+)
76245 .. 79542
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001696.1_g000017.1.cds

Sequence Viewer

Length: 927 bp
atggcaagcagcggtagaggtggaaatgatttagcatggaagtacgcaactcccgtcgaaggaaatcgaaatggtacaacatgtatattttgttttgccactttcaaaagtggaggaattacaagattgaagagtcatttatcgggttatgatcctcacaagagtgtaaagaaatgtgataaggtgccaccggagatcaaaacagaggtgatagcatggataaagagaaaagattctattaagcaagaaaaggcagctgttcaagatgatattagagaagaactctgcaatgattatcttggcaatcaaacaagtctgtacaatgacgatgacgacaatgatgatgatgatgatggatttcagtatccaccagacatgcaccatgcagaacaacaagattatcgtgctgcagtaagacgatcaaccgtagatcgtgataagaactctcagtttagtagaagtgcaagatttcaatttccaaaacaatcgagaggtggtagtagcagtcaacaaccccaacaagttgatcgatcaaaaacctatcgcaaaggaaccgtttggcatatcagaagttggaaaagcttgtatactgcgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgacactggaagacctcttccacaagttgtagaaactacaactaatgctggaatcaatgtagagagagtcttatctgaagaagttgttaaaaacccagaagataattcagatagtgatgatgcgtggggtggtacagcaactccagatagttttgatgatggtggagagggtggaagcggaacatgtggtggaggtgaaagatatgaatatggaaaatcttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

308

Amino Acids

34.22

Weight (kDa)

4.96

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccI GTMKAC 1 cut(s) 587
AciI CCGC 2 cut(s) 12, 828
AclWI GGATC 2 cut(s) 146, 605
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 4 cut(s) 44, 76, 320, 784
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 2 cut(s) 80, 833
AgsI TTSAA 4 cut(s) 106, 130, 263, 473
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 2 cut(s) 257, 582
AluI AGCT 2 cut(s) 257, 582
AlwI GGATC 2 cut(s) 146, 605
ApeKI GCWGC 3 cut(s) 9, 254, 407
Asp700I GAANNNNTTC 2 cut(s) 232, 868
AspLEI GCGC 1 cut(s) 595
AsuHPI GGTGA 2 cut(s) 220, 857
BanI GGYRCC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 667
BbvI GCAGC 3 cut(s) 21, 266, 394
BccI CCATC 3 cut(s) 347, 803, 872
BciVI GTATCC 1 cut(s) 375
BclI TGATCA 1 cut(s) 913
BfmI CTRYAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 375
BisI GCNGC 3 cut(s) 10, 255, 408
BlsI GCNGC 3 cut(s) 11, 256, 409
BmiI GGNNCC 2 cut(s) 186, 553
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 1 cut(s) 667
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BpmI CTGGAG 1 cut(s) 777
Bsa29I ATCGAT 1 cut(s) 529
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 295
BseCI ATCGAT 1 cut(s) 529
BseGI GGATG 1 cut(s) 883
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 1 cut(s) 661
BseXI GCAGC 3 cut(s) 21, 266, 394
BsgI GTGCAG 1 cut(s) 621
BshNI GGYRCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 529
BsiSI CCGG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
BspACI CCGC 2 cut(s) 12, 828
BspCNI CTCAG 1 cut(s) 460
BspDI ATCGAT 1 cut(s) 529
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 186, 553
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 2 cut(s) 146, 605
BspT107I GGYRCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 661
BssMI GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
BssNAI GTATAC 1 cut(s) 588
Bst1107I GTATAC 1 cut(s) 588
Bst4CI ACNGT 2 cut(s) 427, 556
Bst6I CTCTTC 2 cut(s) 125, 672
BstAUI TGTACA 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 7, 636
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 883
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 8 cut(s) 154, 198, 422, 433, 529, 533, 613, 916
BstMBI GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
BstNSI RCATGY 3 cut(s) 84, 379, 837
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 21, 266, 394
BstV2I GAAGAC 1 cut(s) 667
BstZ17I GTATAC 1 cut(s) 588
Bsu15I ATCGAT 1 cut(s) 529
BsuI GTATCC 1 cut(s) 375
BsuTUI ATCGAT 1 cut(s) 529
BtsCI GGATG 1 cut(s) 883
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 7, 636
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 529
Csp6I GTAC 4 cut(s) 43, 75, 319, 783
CviAII CATG 8 cut(s) 36, 81, 216, 376, 383, 620, 834, 917
CviJI RGCY 2 cut(s) 257, 582
CviKI_1 RGCY 2 cut(s) 257, 582
CviQI GTAC 4 cut(s) 43, 75, 319, 783
DdeI CTNAG 1 cut(s) 447
DpnI GATC 8 cut(s) 153, 197, 421, 432, 528, 532, 612, 915
DpnII GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
Eam1104I CTCTTC 2 cut(s) 125, 672
EarI CTCTTC 2 cut(s) 125, 672
Eco57I CTGAAG 1 cut(s) 747
FaeI CATG 8 cut(s) 39, 84, 219, 379, 386, 623, 837, 920
FatI CATG 8 cut(s) 35, 80, 215, 375, 382, 619, 833, 916
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 587
Fnu4HI GCNGC 3 cut(s) 10, 255, 408
FokI GGATG 1 cut(s) 890
Fsp4HI GCNGC 3 cut(s) 10, 255, 408
GlaI GCGC 1 cut(s) 594
GluI GCNGC 3 cut(s) 10, 255, 408
GsuI CTGGAG 1 cut(s) 777
HapII CCGG 1 cut(s) 191
HhaI GCGC 1 cut(s) 595
Hin1II CATG 8 cut(s) 39, 84, 219, 379, 386, 623, 837, 920
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HincII GTYRAC 1 cut(s) 509
HindII GTYRAC 1 cut(s) 509
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 5 cut(s) 133, 233, 702, 717, 885
HpaII CCGG 1 cut(s) 191
HphI GGTGA 2 cut(s) 220, 857
Hpy166II GTNNAC 2 cut(s) 509, 588
Hpy188I TCNGA 3 cut(s) 569, 727, 760
Hpy188III TCNNGA 5 cut(s) 263, 434, 489, 620, 794
Hpy8I GTNNAC 2 cut(s) 509, 588
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 53, 896
HpyCH4III ACNGT 2 cut(s) 427, 556
HpyCH4V TGCA 6 cut(s) 288, 379, 386, 410, 464, 638
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 8 cut(s) 39, 84, 219, 379, 386, 623, 837, 920
HspAI GCGC 1 cut(s) 593
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
LpnPI CCDG 8 cut(s) 204, 384, 642, 648, 684, 759, 807, 910
Lsp1109I GCAGC 3 cut(s) 21, 266, 394
LweI GCATC 1 cut(s) 760
MalI GATC 8 cut(s) 153, 197, 421, 432, 528, 532, 612, 915
MboI GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
MboII GAAGA 7 cut(s) 142, 290, 659, 672, 740, 761, 861
MluCI AATT 5 cut(s) 117, 473, 754, 890, 907
MlyI GAGTC 2 cut(s) 142, 726
MmeI TCCRAC 1 cut(s) 554
MroXI GAANNNNTTC 2 cut(s) 232, 868
MseI TTAA 2 cut(s) 240, 738
MslI CAYNNNNRTG 2 cut(s) 162, 645
MspA1I CMGCKG 2 cut(s) 12, 257
MspI CCGG 1 cut(s) 191
NdeII GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
NlaIII CATG 8 cut(s) 39, 84, 219, 379, 386, 623, 837, 920
NlaIV GGNNCC 2 cut(s) 186, 553
NspI RCATGY 3 cut(s) 84, 379, 837
OliI CACNNNNGTG 1 cut(s) 162
PagI TCATGA 1 cut(s) 619
PciI ACATGT 2 cut(s) 80, 833
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 2 cut(s) 232, 868
PfeI GAWTC 3 cut(s) 233, 702, 885
PkrI GCNGC 3 cut(s) 11, 256, 409
PleI GAGTC 2 cut(s) 141, 725
PpsI GAGTC 2 cut(s) 141, 725
PscI ACATGT 2 cut(s) 80, 833
PspN4I GGNNCC 2 cut(s) 186, 553
PstI CTGCAG 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 4 cut(s) 44, 76, 320, 784
RsaNI GTAC 4 cut(s) 43, 75, 319, 783
RseI CAYNNNNRTG 2 cut(s) 162, 645
SaqAI TTAA 2 cut(s) 240, 738
SatI GCNGC 3 cut(s) 10, 255, 408
Sau3AI GATC 8 cut(s) 151, 195, 419, 430, 526, 530, 610, 913
SchI GAGTC 2 cut(s) 142, 726
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 162, 645
Sse9I AATT 5 cut(s) 117, 473, 754, 890, 907
SsiI CCGC 2 cut(s) 12, 828
TaaI ACNGT 2 cut(s) 427, 556
TaqI TCGA 5 cut(s) 57, 67, 488, 529, 645
TasI AATT 5 cut(s) 117, 473, 754, 890, 907
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 3 cut(s) 233, 702, 885
Tru1I TTAA 2 cut(s) 240, 738
Tru9I TTAA 2 cut(s) 240, 738
TscAI CASTG 1 cut(s) 661
TseI GCWGC 3 cut(s) 9, 254, 407
TspDTI ATGAA 2 cut(s) 608, 870
TspRI CASTG 1 cut(s) 661
XceI RCATGY 3 cut(s) 84, 379, 837
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XmiI GTMKAC 1 cut(s) 587
XmnI GAANNNNTTC 2 cut(s) 232, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.