Rroxscaffold_2G00093920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000220
Physical Location & Seq
Forward (+)
15223132 .. 15226744
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093920.1

Sequence Viewer

Length: 852 bp
ATGGGTGTACACGTGGCGCTCTTGACCTGGATAAGGGATATTGCAGAATTTCCAATGGATTCTGATTTACGAATTAGGAATACAAACTTTGAGTGGATTCCACAATCTAAGGGGAGTGGCAAATCATGGCACTATAACCGATATGGTAGTGATGATCATACTACTTATCCTGGTGCAAATCTTGAATACAATTCTAAAGCTAGGGATGCACAAGGAAGACGTGATAGCCATTTGTCTCTAAATGAGTTTGAATCACTTTCTTCAAGTCTTGACTCAATGGACATAGGAACTCAATATAGTGATAACCCTAACCCATTCCATTCTCATTATCCTCATCATGAAATGAGTTCTACCTCGAAAATACTTACGGAACTGGATCAAGGTCACAAGGTGGAAGGACATATGACCTTTTTGATCATTCTTCGTCCCAAATGTCATATGCTTCATATAAAGAAACACCATATTGGCCACATAAAATCCCCATTTTCTCTCTCCACCTCTCCTTTGCTTCCCGAAACCCAAAATTCCTCAAATCTCTCAATTCAGAAATTTTGTTCAGATCCAGTCCCCGGAACCGTGAAATCGCTTGGAATAACACCATTAGTGAAATCGAGGACCGAAAAGGAGCGTAAGACCCGGCTCCGTGAAATCAGTCCTCTATATTCATGTCTATCTCTTAGAAGCCAATCTTTTCTTCTCTCATCCCCCTCTCTCTTCCGCTCCCTCACTTCTCCCCCACTCCCCACCACCGATTCTCCCCACCCATCATCTCCGCTGTCCAATTCCGCCACCCTCACGCCCTCCCCGCCGTCCAATTTGAGGGGGACGAATGTTGAAAAGGTTTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.71

Weight (kDa)

8.91

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 720
AciI CCGC 4 cut(s) 718, 773, 786, 806
AclWI GGATC 2 cut(s) 384, 554
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 3 cut(s) 47, 523, 548
AcvI CACGTG 1 cut(s) 13
AdeI CACNNNGTG 1 cut(s) 391
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 3 cut(s) 33, 569, 819
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 4 cut(s) 185, 251, 264, 836
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 2 cut(s) 26, 169
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 384, 554
AoxI GGCC 1 cut(s) 466
ApoI RAATTY 3 cut(s) 47, 523, 548
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 615
AsuC2I CCSGG 2 cut(s) 570, 637
AvaII GGWCC 1 cut(s) 615
BalI TGGCCA 1 cut(s) 468
BbrPI CACGTG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 223
BccI CCATC 1 cut(s) 772
BceAI ACGGC 1 cut(s) 793
BciT130I CCWGG 2 cut(s) 28, 171
BclI TGATCA 2 cut(s) 154, 414
BcnI CCSGG 2 cut(s) 570, 637
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 20
Bme1390I CCNGG 4 cut(s) 28, 171, 570, 637
Bme18I GGWCC 1 cut(s) 615
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 2 cut(s) 574, 641
BmrFI CCNGG 4 cut(s) 28, 171, 570, 637
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 223
BpuMI CCSGG 2 cut(s) 570, 637
BsaAI YACGTR 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 568
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 569, 819
Bse1I ACTGG 2 cut(s) 378, 563
BseBI CCWGG 2 cut(s) 28, 171
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 2 cut(s) 211, 701
BseLI CCNNNNNNNGG 3 cut(s) 33, 569, 819
BseNI ACTGG 2 cut(s) 378, 563
BshFI GGCC 1 cut(s) 468
BsiSI CCGG 2 cut(s) 570, 637
BslFI GGGAC 3 cut(s) 411, 551, 838
BslI CCNNNNNNNGG 3 cut(s) 33, 569, 819
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 3 cut(s) 411, 551, 838
BsnI GGCC 1 cut(s) 468
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 4 cut(s) 154, 376, 414, 559
BspACI CCGC 4 cut(s) 718, 773, 786, 806
BspANI GGCC 1 cut(s) 468
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 574, 641
BspPI GGATC 2 cut(s) 384, 554
BsrBI CCGCTC 1 cut(s) 720
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 2 cut(s) 378, 563
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 4 cut(s) 154, 376, 414, 559
Bst2UI CCWGG 2 cut(s) 28, 171
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 1 cut(s) 719
BstAUI TGTACA 1 cut(s) 7
BstBAI YACGTR 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 108, 677
BstENI CCTNNNNNAGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 211, 701
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 157, 379, 417, 562
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 4 cut(s) 154, 376, 414, 559
BstMWI GCNNNNNNNGC 2 cut(s) 206, 805
BstNI CCWGG 2 cut(s) 28, 171
BstSCI CCNGG 4 cut(s) 26, 169, 568, 635
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 1 cut(s) 468
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 211, 701
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 615
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 126, 338, 666
CviJI RGCY 5 cut(s) 200, 228, 468, 640, 684
CviKI_1 RGCY 5 cut(s) 200, 228, 468, 640, 684
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 108, 677
DpnI GATC 4 cut(s) 156, 378, 416, 561
DpnII GATC 4 cut(s) 154, 376, 414, 559
DraIII CACNNNGTG 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 719
EciI GGCGGA 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 615
Eco72I CACGTG 1 cut(s) 13
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 26, 169
FaeI CATG 3 cut(s) 129, 341, 669
FalI AAGNNNNNCTT 2 cut(s) 673, 705
FaqI GGGAC 3 cut(s) 411, 551, 838
FatI CATG 3 cut(s) 125, 337, 665
FauI CCCGC 1 cut(s) 813
FauNDI CATATG 2 cut(s) 402, 438
FbaI TGATCA 2 cut(s) 154, 414
FokI GGATG 2 cut(s) 218, 688
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 1 cut(s) 468
HapII CCGG 2 cut(s) 570, 637
HhaI GCGC 1 cut(s) 19
Hin1II CATG 3 cut(s) 129, 341, 669
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 5 cut(s) 59, 97, 251, 272, 752
HpaII CCGG 2 cut(s) 570, 637
Hpy166II GTNNAC 2 cut(s) 8, 10
Hpy188I TCNGA 3 cut(s) 64, 546, 559
Hpy188III TCNNGA 5 cut(s) 22, 182, 269, 338, 512
Hpy8I GTNNAC 2 cut(s) 8, 10
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 2 cut(s) 12, 220
HpyCH4V TGCA 3 cut(s) 44, 176, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 805
HpyF3I CTNAG 2 cut(s) 108, 677
HpySE526I ACGT 2 cut(s) 12, 220
Hsp92II CATG 3 cut(s) 129, 341, 669
HspAI GCGC 1 cut(s) 17
Ksp22I TGATCA 2 cut(s) 154, 414
Kzo9I GATC 4 cut(s) 154, 376, 414, 559
LmnI GCTCC 3 cut(s) 625, 645, 725
LpnPI CCDG 8 cut(s) 13, 40, 156, 183, 359, 576, 583, 650
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 12, 220
MaeIII GTNAC 1 cut(s) 383
MalI GATC 4 cut(s) 156, 378, 416, 561
MbiI CCGCTC 1 cut(s) 720
MboI GATC 4 cut(s) 154, 376, 414, 559
MboII GAAGA 5 cut(s) 228, 252, 413, 686, 706
MflI RGATCY 1 cut(s) 559
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 8 cut(s) 47, 72, 190, 523, 540, 548, 781, 814
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 1 cut(s) 266
Mox20I TGGCCA 1 cut(s) 468
MscI TGGCCA 1 cut(s) 468
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 2 cut(s) 570, 637
MspR9I CCNGG 4 cut(s) 28, 171, 570, 637
MvaI CCWGG 2 cut(s) 28, 171
MwoI GCNNNNNNNGC 2 cut(s) 206, 805
NciI CCSGG 2 cut(s) 570, 637
NdeI CATATG 2 cut(s) 402, 438
NdeII GATC 4 cut(s) 154, 376, 414, 559
NlaIII CATG 3 cut(s) 129, 341, 669
NlaIV GGNNCC 2 cut(s) 574, 641
NmuCI GTSAC 1 cut(s) 383
PagI TCATGA 1 cut(s) 337
PfeI GAWTC 4 cut(s) 59, 97, 251, 752
PleI GAGTC 1 cut(s) 266
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 26, 169
PspCI CACGTG 1 cut(s) 13
PspGI CCWGG 2 cut(s) 26, 169
PspN4I GGNNCC 2 cut(s) 574, 641
PspPI GGNCC 1 cut(s) 615
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
Sau3AI GATC 4 cut(s) 154, 376, 414, 559
Sau96I GGNCC 1 cut(s) 615
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 4 cut(s) 28, 171, 570, 637
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 615
Sse9I AATT 8 cut(s) 47, 72, 190, 523, 540, 548, 781, 814
SsiI CCGC 4 cut(s) 718, 773, 786, 806
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 4 cut(s) 26, 169, 568, 635
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 2 cut(s) 15, 223
TaqI TCGA 2 cut(s) 356, 611
TaqII GACCGA 1 cut(s) 632
TasI AATT 8 cut(s) 47, 72, 190, 523, 540, 548, 781, 814
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 4 cut(s) 59, 97, 251, 752
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 3 cut(s) 354, 434, 654
TspGWI ACGGA 2 cut(s) 383, 632
VpaK11BI GGWCC 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 31
XapI RAATTY 3 cut(s) 47, 523, 548
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.