RLG00000004743

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000220
Physical Location & Seq
Forward (+)
61868702 .. 61869236
535 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004743

Sequence Viewer

Length: 351 bp
ATGACCCTCGCGAGAGAGAAATATCGTTGGTTCCTCTCTTTGGCGAGCGGCGGCGACAAAAATTCTTGCTTGCTTCTCCATGGAAGTGGCGATAAATCTCTTCGTTTGCCTCTTTCTTCGGTTAGAGGAGGCGGTTTTGCTGATGTTGATGGGATTGGAAATGGCATCTTGATCGACCATTTCTGGTGGGGTGTTCCTATTAATAGTGAGGATGGATCTGCTCTTGATCCGTCGATCTATGGTGGCGGCCAAATTACTCTTGTTGGAAGTGGTGGTGCTCTGTGGTTGCTGACATTGGGACTGTTTTGGTGGCCACCGCCGGGGCTTGTTACGGCGATGGAGGCAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.21

Weight (kDa)

5.07

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 48
AccII CGCG 1 cut(s) 11
AciI CCGC 5 cut(s) 48, 51, 132, 246, 317
AclWI GGATC 2 cut(s) 221, 223
AcoI YGGCCR 2 cut(s) 247, 311
AcsI RAATTY 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 40, 320
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 2 cut(s) 221, 223
AoxI GGCC 2 cut(s) 247, 311
ApoI RAATTY 1 cut(s) 61
AseI ATTAAT 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 321
BalI TGGCCA 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 280
BccI CCATC 3 cut(s) 143, 206, 331
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcnI CCSGG 1 cut(s) 321
BisI GCNGC 3 cut(s) 49, 52, 247
BlsI GCNGC 3 cut(s) 50, 53, 248
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 79, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 320
BseDI CCNNGG 2 cut(s) 79, 320
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 40, 320
BseRI GAGGAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 249, 313
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 40, 320
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 2 cut(s) 249, 313
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 4 cut(s) 171, 215, 226, 234
Bsp19I CCATGG 1 cut(s) 79
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 5 cut(s) 48, 51, 132, 246, 317
BspANI GGCC 2 cut(s) 249, 313
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 221, 223
BsrBI CCGCTC 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 79, 320
BssMI GATC 4 cut(s) 171, 215, 226, 234
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 46, 71
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 4 cut(s) 174, 218, 229, 237
BstMBI GATC 4 cut(s) 171, 215, 226, 234
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 319
BstUI CGCG 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 86
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 2 cut(s) 249, 313
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 217
BtuMI TCGCGA 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 46, 71
CviAII CATG 1 cut(s) 80
CviJI RGCY 3 cut(s) 249, 313, 325
CviKI_1 RGCY 3 cut(s) 249, 313, 325
DpnI GATC 4 cut(s) 173, 217, 228, 236
DpnII GATC 4 cut(s) 171, 215, 226, 234
EaeI YGGCCR 2 cut(s) 247, 311
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 83
FaiI YATR 2 cut(s) 81, 240
FaqI GGGAC 1 cut(s) 312
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 49, 52, 247
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 49, 52, 247
GluI GCNGC 3 cut(s) 49, 52, 247
HaeIII GGCC 2 cut(s) 249, 313
HapII CCGG 1 cut(s) 320
Hin1II CATG 1 cut(s) 83
HpaII CCGG 1 cut(s) 320
Hpy188III TCNNGA 3 cut(s) 10, 169, 224
Hpy99I CGWCG 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 4 cut(s) 171, 215, 226, 234
LpnPI CCDG 3 cut(s) 169, 330, 333
LweI GCATC 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 328
MalI GATC 4 cut(s) 173, 217, 228, 236
MbiI CCGCTC 1 cut(s) 48
MboI GATC 4 cut(s) 171, 215, 226, 234
MboII GAAGA 2 cut(s) 92, 108
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 280
MlsI TGGCCA 1 cut(s) 313
MluCI AATT 2 cut(s) 61, 252
MluNI TGGCCA 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 7 cut(s) 17, 44, 119, 120, 122, 202, 334
Mox20I TGGCCA 1 cut(s) 313
MscI TGGCCA 1 cut(s) 313
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 313
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 321
NcoI CCATGG 1 cut(s) 79
NdeII GATC 4 cut(s) 171, 215, 226, 234
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 32
NruI TCGCGA 1 cut(s) 11
PkrI GCNGC 3 cut(s) 50, 53, 248
PshBI ATTAAT 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 215
RruI TCGCGA 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 49, 52, 247
Sau3AI GATC 4 cut(s) 171, 215, 226, 234
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 2 cut(s) 61, 252
SsiI CCGC 5 cut(s) 48, 51, 132, 246, 317
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 174, 233
TasI AATT 2 cut(s) 61, 252
TauI GCSGC 3 cut(s) 51, 54, 249
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 219
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.