Rorug07G0341800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000220
Physical Location & Seq
Forward (+)
37638084 .. 37639706
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0341800.1

Sequence Viewer

Length: 1623 bp
ATGGGGTTTCGAGACATGATTTGTTTCAACCAGGCTCTTTTGGCAAAACAAGGGTGGAGGCTTCTCCAGCGACCGGAATCCCTAGTCACGCGTTTGCTCAAAGCCAGGTATTTCCCGGATTCCTCTTTTATGCAAGCTAATCTTGGTAATGATCCCTCCTATGCATGGAGAAGTATTCTGGTGGGCAGGAGTGTGTTGGAGCTGGGGTTACGGTATCGAATTGGTGATGGGTGCTCTGTATCTATCTGCCATGACCCATGGGTCCCTCTTCCACATCACTTTCGGCCTTTTTCTCAACCTATGTCTGGGACTGAGGATTTTTTAGTCAGTGATCTAATTGACCCTGATGAAATGGAATGGCTACTGCCCATACTTCAAGAATTATTCACAGAGGAGGAGGTAAGTATTATTTCTAGCATTCCACTTGGAAGAAGCCCTATACAGGATGTGCTTATGTGGCACTATGATAAATATGGTGCTTATAATGTTAAAAGTGGTTACAACTTGGCTCGAGCTCATAACAAGCTTACGGACCAGCCCTCCTCTTCAAGGGGTACGAGTGAGACAAATGGGATTTATTGGAAGAAGATTTGGAAAGCCAAGATTCCTCCTAAAGTCAAGTCTTTCATTTGGAGGCTATGTCGTGACATCCTCCCCACTAGGGCAGCTTTGTCGCGCAGGATGCAGCTTCCGTCTTTAAGATGTGTTTTTTGCTCTCATAGTGTGGAAACTAGCTTACATGTCTTTCGTGATTGCCCGGTTACGATAACTTTCTGGATACATAATCATATGCATCTTAATAGCGTTGCGTTTCCAGCTCCGACTGTGTTTGATTGGTTGGTGGCAGTTTTGGATAATCTGGATTCACAACGGGCTGATATCTTCTTTGTCTCCCTCTGGGCCATATGGTGTGAGAGGAATAATTTGGTATGGAATGGTGGGACATGTAATCCCTTCAACATGGCAGTTTGGGCATTAAAACTACTGCATGATTATCAAAAGCTACACCTACAGGCTGCACACAAGTTTAAGAGGCCCCCTGCAAAATGGCGTTGTCCACCTAGTGGAAGGCTCAAAGTGAATGTTGACGGCGCATTCCATGCAGCTACTGGAACTGGAGGTGTAGGCGTAATCGCAAGGGATGAGTATGGACACTGTGCCGCTGCCTTAGCCAAGTATGTTCCCAATGCTCGCTCAACTTTACATGTAGAGGCTGAAGCTATGCGGGTCGGCCTGCTTGTGGCTATCCATCAGCAATGGAGTGAAGTAGAGTTTGAAAGTGACAGCGCTACAGTGTTGACTGCTCTAGCTAGAGAGAATGAAGACTTGTCTGAGGTTGGTGTTATTTTGAATGATTGTAAAAGATATATGCAAGATGTCAATTATATTCTTCTTAGACATGTCTATAGGGAAGCAAATGGTGTAGCGCATAGACTGGCGCACCTTGCTAGTATGTCCAGGTTGGACGAGTTTTGGGTGGAGGACACTCCTGATATTATTCAGGACGTGCTTATTGAGAATGGTTGTATTTTGACTCGAGGTTTAGGCTCTATGTCCCCCTCGTTGTACTATCCTTCTATGAATAATGAAAGCTTAGGGAGGAGTACCACCACTCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

540

Amino Acids

61.33

Weight (kDa)

7.29

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 161 - 259 2.1e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 361 - 482 1.7e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AasI GACNNNNNNGTC 1 cut(s) 260
AccB7I CCANNNNNTGG 1 cut(s) 1064
AccII CGCG 2 cut(s) 91, 676
AciI CCGC 2 cut(s) 1161, 1225
AclWI GGATC 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 1236
AdeI CACNNNGTG 1 cut(s) 1064
AfaI GTAC 3 cut(s) 556, 1568, 1606
AfeI AGCGCT 1 cut(s) 1288
AfiI CCNNNNNNNGG 8 cut(s) 73, 165, 305, 442, 549, 661, 1064, 1240
AflIII ACRYGT 5 cut(s) 89, 739, 944, 1204, 1399
AgsI TTSAA 6 cut(s) 28, 377, 549, 958, 1277, 1351
AjiI CACGTC 1 cut(s) 1507
AjnI CCWGG 3 cut(s) 30, 104, 1457
Alw21I GWGCWC 2 cut(s) 236, 517
Alw26I GTCTC 3 cut(s) 6, 557, 895
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 1109
Ama87I CYCGRG 2 cut(s) 510, 1536
Aor51HI AGCGCT 1 cut(s) 1288
AoxI GGCC 4 cut(s) 284, 900, 1034, 1231
ApeKI GCWGC 5 cut(s) 665, 685, 1016, 1103, 1163
AspLEI GCGC 5 cut(s) 678, 1094, 1289, 1429, 1441
AspS9I GGNCC 4 cut(s) 262, 532, 900, 1035
AsuC2I CCSGG 2 cut(s) 116, 758
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 2 cut(s) 510, 1536
AvaII GGWCC 2 cut(s) 262, 532
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 1329
Bbv12I GWGCWC 2 cut(s) 236, 517
BbvI GCAGC 5 cut(s) 677, 697, 1003, 1115, 1150
BccI CCATC 2 cut(s) 221, 1257
BceAI ACGGC 1 cut(s) 1105
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BciT130I CCWGG 3 cut(s) 32, 106, 1459
BciVI GTATCC 1 cut(s) 771
BcnI CCSGG 2 cut(s) 116, 758
BcoDI GTCTC 3 cut(s) 6, 557, 895
BfaI CTAG 8 cut(s) 83, 414, 660, 732, 1062, 1307, 1311, 1449
BfmI CTRYAG 3 cut(s) 1010, 1290, 1405
BfoI RGCGCY 1 cut(s) 1290
BfuI GTATCC 1 cut(s) 771
BisI GCNGC 6 cut(s) 666, 686, 1017, 1104, 1161, 1164
BlsI GCNGC 6 cut(s) 667, 687, 1018, 1105, 1162, 1165
Bme1390I CCNGG 5 cut(s) 32, 106, 116, 758, 1459
Bme18I GGWCC 2 cut(s) 262, 532
BmeT110I CYCGRG 2 cut(s) 510, 1536
BmgBI CACGTC 1 cut(s) 1507
BmgT120I GGNCC 4 cut(s) 262, 532, 900, 1035
BmiI GGNNCC 3 cut(s) 263, 264, 1037
BmrFI CCNGG 5 cut(s) 32, 106, 116, 758, 1459
BmsI GCATC 2 cut(s) 672, 802
BpiI GAAGAC 1 cut(s) 1329
BpmI CTGGAG 2 cut(s) 50, 1137
Bpu10I CCTNAGC 2 cut(s) 1168, 1594
BpuMI CCSGG 2 cut(s) 116, 758
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 7 cut(s) 191, 221, 524, 554, 625, 655, 1597
Bsc4I CCNNNNNNNGG 8 cut(s) 73, 165, 305, 442, 549, 661, 1064, 1240
Bse1I ACTGG 3 cut(s) 1114, 1120, 1440
Bse3DI GCAATG 1 cut(s) 1262
BseBI CCWGG 3 cut(s) 32, 106, 1459
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 4 cut(s) 451, 648, 687, 1147
BseLI CCNNNNNNNGG 8 cut(s) 73, 165, 305, 442, 549, 661, 1064, 1240
BseMI GCAATG 1 cut(s) 1262
BseMII CTCAG 2 cut(s) 303, 1323
BseNI ACTGG 3 cut(s) 1114, 1120, 1440
BseRI GAGGAG 4 cut(s) 407, 410, 532, 1615
BseXI GCAGC 5 cut(s) 677, 697, 1003, 1115, 1150
BseYI CCCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 2 cut(s) 91, 676
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 4 cut(s) 286, 902, 1036, 1233
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 236, 517
BsiHKCI CYCGRG 2 cut(s) 510, 1536
BsiSI CCGG 3 cut(s) 74, 116, 758
BslFI GGGAC 4 cut(s) 248, 322, 955, 1540
BslI CCNNNNNNNGG 8 cut(s) 73, 165, 305, 442, 549, 661, 1064, 1240
BsmAI GTCTC 3 cut(s) 6, 557, 895
BsmFI GGGAC 4 cut(s) 248, 322, 955, 1540
BsmI GAATGC 2 cut(s) 417, 1094
BsnI GGCC 4 cut(s) 286, 902, 1036, 1233
BsoBI CYCGRG 2 cut(s) 510, 1536
Bsp1286I GDGCHC 2 cut(s) 236, 517
Bsp143I GATC 2 cut(s) 151, 331
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 2 cut(s) 1161, 1225
BspANI GGCC 4 cut(s) 286, 902, 1036, 1233
BspCNI CTCAG 2 cut(s) 304, 1324
BspFNI CGCG 2 cut(s) 91, 676
BspLI GGNNCC 3 cut(s) 263, 264, 1037
BspPI GGATC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 1262
BsrI ACTGG 3 cut(s) 1114, 1120, 1440
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 151, 331
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 32, 106, 1459
Bst4CI ACNGT 4 cut(s) 213, 826, 1157, 1294
Bst6I CTCTTC 2 cut(s) 273, 550
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstC8I GCNNGC 3 cut(s) 135, 1192, 1235
BstDEI CTNAG 5 cut(s) 312, 1168, 1332, 1394, 1594
BstDSI CCRYGG 1 cut(s) 257
BstENI CCTNNNNNAGG 1 cut(s) 547
BstF5I GGATG 4 cut(s) 451, 648, 687, 1147
BstFNI CGCG 2 cut(s) 91, 676
BstH2I RGCGCY 1 cut(s) 1290
BstHHI GCGC 5 cut(s) 678, 1094, 1289, 1429, 1441
BstKTI GATC 2 cut(s) 154, 334
BstMAI GTCTC 3 cut(s) 6, 557, 895
BstMBI GATC 2 cut(s) 151, 331
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 9 cut(s) 41, 67, 457, 682, 815, 971, 1100, 1169, 1445
BstNI CCWGG 3 cut(s) 32, 106, 1459
BstNSI RCATGY 4 cut(s) 743, 948, 1208, 1403
BstSCI CCNGG 5 cut(s) 30, 104, 114, 756, 1457
BstSFI CTRYAG 3 cut(s) 1010, 1290, 1405
BstUI CGCG 2 cut(s) 91, 676
BstV1I GCAGC 5 cut(s) 677, 697, 1003, 1115, 1150
BstV2I GAAGAC 1 cut(s) 1329
BsuI GTATCC 1 cut(s) 771
BsuRI GGCC 4 cut(s) 286, 902, 1036, 1233
BtgI CCRYGG 1 cut(s) 257
BtrI CACGTC 1 cut(s) 1507
BtsCI GGATG 4 cut(s) 451, 648, 687, 1147
BtsIMutI CAGTG 3 cut(s) 334, 1153, 1299
Cac8I GCNNGC 3 cut(s) 135, 1192, 1235
CaiI CAGNNNCTG 1 cut(s) 1109
CfoI GCGC 5 cut(s) 678, 1094, 1289, 1429, 1441
Cfr13I GGNCC 4 cut(s) 262, 532, 900, 1035
Csp6I GTAC 3 cut(s) 555, 1567, 1605
CviQI GTAC 3 cut(s) 555, 1567, 1605
DdeI CTNAG 5 cut(s) 312, 1168, 1332, 1394, 1594
DpnI GATC 2 cut(s) 153, 333
DpnII GATC 2 cut(s) 151, 331
DraIII CACNNNGTG 1 cut(s) 1064
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 273, 550
EarI CTCTTC 2 cut(s) 273, 550
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 517
Eco32I GATATC 1 cut(s) 880
Eco47I GGWCC 2 cut(s) 262, 532
Eco47III AGCGCT 1 cut(s) 1288
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 1236
Eco88I CYCGRG 2 cut(s) 510, 1536
EcoICRI GAGCTC 1 cut(s) 515
EcoNI CCTNNNNNAGG 1 cut(s) 547
EcoO109I RGGNCCY 2 cut(s) 262, 1035
EcoRII CCWGG 3 cut(s) 30, 104, 1457
EcoRV GATATC 1 cut(s) 880
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 2 cut(s) 166, 795
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 257
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 4 cut(s) 248, 322, 955, 1540
FauI CCCGC 1 cut(s) 1218
FauNDI CATATG 2 cut(s) 789, 905
Fnu4HI GCNGC 6 cut(s) 666, 686, 1017, 1104, 1161, 1164
FokI GGATG 4 cut(s) 458, 635, 694, 1154
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 6 cut(s) 666, 686, 1017, 1104, 1161, 1164
FspBI CTAG 8 cut(s) 83, 414, 660, 732, 1062, 1307, 1311, 1449
GlaI GCGC 5 cut(s) 677, 1093, 1288, 1428, 1440
GluI GCNGC 6 cut(s) 666, 686, 1017, 1104, 1161, 1164
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 2 cut(s) 50, 1137
HaeII RGCGCY 1 cut(s) 1290
HaeIII GGCC 4 cut(s) 286, 902, 1036, 1233
HapII CCGG 3 cut(s) 74, 116, 758
HhaI GCGC 5 cut(s) 678, 1094, 1289, 1429, 1441
Hin6I GCGC 5 cut(s) 676, 1092, 1287, 1427, 1439
HinP1I GCGC 5 cut(s) 676, 1092, 1287, 1427, 1439
HincII GTYRAC 2 cut(s) 1087, 1299
HindII GTYRAC 2 cut(s) 1087, 1299
HindIII AAGCTT 2 cut(s) 524, 1591
HinfI GANTC 5 cut(s) 77, 119, 604, 863, 1534
HpaII CCGG 3 cut(s) 74, 116, 758
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 1058, 1087, 1299
Hpy188I TCNGA 2 cut(s) 822, 1333
Hpy188III TCNNGA 8 cut(s) 11, 377, 644, 749, 775, 860, 1490, 1502
Hpy8I GTNNAC 3 cut(s) 1058, 1087, 1299
HpyAV CCTTC 3 cut(s) 964, 1062, 1584
HpyCH4III ACNGT 4 cut(s) 213, 826, 1157, 1294
HpyCH4IV ACGT 1 cut(s) 1506
HpyCH4V TGCA 9 cut(s) 133, 164, 685, 793, 988, 1019, 1043, 1103, 1372
HpyF10VI GCNNNNNNNGC 9 cut(s) 41, 67, 457, 682, 815, 971, 1100, 1169, 1445
HpyF3I CTNAG 5 cut(s) 312, 1168, 1332, 1394, 1594
HpySE526I ACGT 1 cut(s) 1506
HspAI GCGC 5 cut(s) 676, 1092, 1287, 1427, 1439
KflI GGGWCCC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 151, 331
LmnI GCTCC 2 cut(s) 199, 823
Lsp1109I GCAGC 5 cut(s) 677, 697, 1003, 1115, 1150
LweI GCATC 2 cut(s) 672, 802
MaeI CTAG 8 cut(s) 83, 414, 660, 732, 1062, 1307, 1311, 1449
MaeII ACGT 1 cut(s) 1506
MaeIII GTNAC 6 cut(s) 85, 207, 497, 644, 760, 1280
MalI GATC 2 cut(s) 153, 333
MboI GATC 2 cut(s) 151, 331
MboII GAAGA 8 cut(s) 260, 441, 537, 595, 598, 874, 1334, 1382
MhlI GDGCHC 2 cut(s) 236, 517
MluCI AATT 5 cut(s) 219, 336, 380, 922, 1381
MluI ACGCGT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 1528
MmeI TCCRAC 3 cut(s) 177, 845, 1443
Mph1103I ATGCAT 2 cut(s) 166, 795
MseI TTAA 5 cut(s) 489, 698, 798, 977, 1029
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 3 cut(s) 74, 116, 758
MspR9I CCNGG 5 cut(s) 32, 106, 116, 758, 1459
Mva1269I GAATGC 2 cut(s) 417, 1094
MvaI CCWGG 3 cut(s) 32, 106, 1459
MvnI CGCG 2 cut(s) 91, 676
MwoI GCNNNNNNNGC 9 cut(s) 41, 67, 457, 682, 815, 971, 1100, 1169, 1445
NciI CCSGG 2 cut(s) 116, 758
NcoI CCATGG 1 cut(s) 257
NdeI CATATG 2 cut(s) 789, 905
NdeII GATC 2 cut(s) 151, 331
NlaIV GGNNCC 3 cut(s) 263, 264, 1037
NmuCI GTSAC 3 cut(s) 85, 644, 1280
NsiI ATGCAT 2 cut(s) 166, 795
NspI RCATGY 4 cut(s) 743, 948, 1208, 1403
PaeR7I CTCGAG 2 cut(s) 510, 1536
PciI ACATGT 4 cut(s) 739, 944, 1204, 1399
PctI GAATGC 2 cut(s) 417, 1094
PfeI GAWTC 4 cut(s) 77, 119, 604, 863
PflMI CCANNNNNTGG 1 cut(s) 1064
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 6 cut(s) 667, 687, 1018, 1105, 1162, 1165
PleI GAGTC 1 cut(s) 1528
PpsI GAGTC 1 cut(s) 1528
PpuMI RGGWCCY 1 cut(s) 262
PscI ACATGT 4 cut(s) 739, 944, 1204, 1399
PsiI TTATAA 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 3 cut(s) 30, 104, 1457
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 3 cut(s) 30, 104, 1457
PspN4I GGNNCC 3 cut(s) 263, 264, 1037
PspPI GGNCC 4 cut(s) 262, 532, 900, 1035
PspPPI RGGWCCY 1 cut(s) 262
PspXI VCTCGAGB 2 cut(s) 510, 1536
PstNI CAGNNNCTG 1 cut(s) 1109
RsaI GTAC 3 cut(s) 556, 1568, 1606
RsaNI GTAC 3 cut(s) 555, 1567, 1605
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 5 cut(s) 489, 698, 798, 977, 1029
SatI GCNGC 6 cut(s) 666, 686, 1017, 1104, 1161, 1164
Sau3AI GATC 2 cut(s) 151, 331
Sau96I GGNCC 4 cut(s) 262, 532, 900, 1035
SchI GAGTC 1 cut(s) 1528
ScrFI CCNGG 5 cut(s) 32, 106, 116, 758, 1459
SduI GDGCHC 2 cut(s) 236, 517
SfaNI GCATC 2 cut(s) 672, 802
SfcI CTRYAG 3 cut(s) 1010, 1290, 1405
Sfr274I CTCGAG 2 cut(s) 510, 1536
SinI GGWCC 2 cut(s) 262, 532
SlaI CTCGAG 2 cut(s) 510, 1536
SmlI CTYRAG 2 cut(s) 510, 1536
SmoI CTYRAG 2 cut(s) 510, 1536
Sse9I AATT 5 cut(s) 219, 336, 380, 922, 1381
SsiI CCGC 2 cut(s) 1161, 1225
SspMI CTAG 8 cut(s) 83, 414, 660, 732, 1062, 1307, 1311, 1449
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 5 cut(s) 30, 104, 114, 756, 1457
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 4 cut(s) 213, 826, 1157, 1294
TaiI ACGT 1 cut(s) 1509
TaqI TCGA 4 cut(s) 10, 217, 511, 1537
TasI AATT 5 cut(s) 219, 336, 380, 922, 1381
TatI WGTACW 1 cut(s) 1566
TauI GCSGC 1 cut(s) 1163
TfiI GAWTC 4 cut(s) 77, 119, 604, 863
Tru1I TTAA 5 cut(s) 489, 698, 798, 977, 1029
Tru9I TTAA 5 cut(s) 489, 698, 798, 977, 1029
TscAI CASTG 3 cut(s) 334, 1160, 1299
TseFI GTSAC 3 cut(s) 85, 644, 1280
TseI GCWGC 5 cut(s) 665, 685, 1016, 1103, 1163
Tsp45I GTSAC 3 cut(s) 85, 644, 1280
TspDTI ATGAA 5 cut(s) 363, 616, 1335, 1595, 1602
TspGWI ACGGA 2 cut(s) 545, 681
TspRI CASTG 3 cut(s) 334, 1160, 1299
Van91I CCANNNNNTGG 1 cut(s) 1064
VpaK11BI GGWCC 2 cut(s) 262, 532
XagI CCTNNNNNAGG 1 cut(s) 547
XceI RCATGY 4 cut(s) 743, 948, 1208, 1403
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XhoI CTCGAG 2 cut(s) 510, 1536
XspI CTAG 8 cut(s) 83, 414, 660, 732, 1062, 1307, 1311, 1449
Zsp2I ATGCAT 2 cut(s) 166, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.