RchiOBHm_Chr4g0385621

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000220
Physical Location & Seq
Forward (+)
1176088 .. 1178842
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35906

Sequence Viewer

Length: 990 bp
ATGCGGGATTTTTGTAAAGGAGAAATTATTCGTGCCGCACCAACTCGATTCGCAACCAACTTCATTTCATTGGAAAGCTTGGTCAAGAAGAAGTCAGGATTGAAGCAATTGTTTTCAAGTGATTGGTGGACCAATAGTAATTTTAGTCGCACTGATCATGGTCGCATTGTTGAAGATATTATATTTGATCAAGTATTTTGGAATCAAGCAGAAAATGTGTGTCAAATATCTGAGCCGCTTTATAAAGTATTACGCGTTGTCGACCCAGAAGTCTATCCAACCATGGGTGCTATTTATGAGCTGATGCGTGTAGTGAAGCAAGAGTTAGAAAGAAAGCATGGAGCAAAATGGGTAGTAAAAATTATCAATGATCGGTGGTGCAAAACATTATGGCATGATTTACATTCAGCAGGTTATTACTTGAATCCTCGATACAATTATAGACCAGGCGTCGGAGATGATTGTATGCTTATTGAAGCTGTGCATAAAGTTTTTTCTAAATTGGACCCTAACTCTCCAACAATAGGTCAATTCGGAAAAGAGCTTACCTATTTTAAAGATGCAAAACTAAATTTTGGCACGCCAACAGCAATTGCAGCCAGAACAGAGATGTCTCCCACCGATTGGTGGGTAATGTATGGAAGTAGTGCACCTACTGTGAGAAAGTTAGCTATTAAAGTATTATCACAAACAGCATCGGCATCTGCCTGTGAAAGGAATTGGAGCACATTTGCACTAATTCATACTAAGCAAAGAAACAAGTTGGGATATGGTAGGCTACAGAAATTGGTATTCTGCTATTACAACATGAGGCTTAAAATTCGAGACAGAGAAGCTGCGCATTCTCAGATGGAACAAAAAGATCCATTGGATGTCTTTGATATTGGTACTGAGTTTGATGACGAAGAGAGTGATCAGCTTTATGAATGGATCAGGCCACTTCATTTGGATGACGATGAACGCAATCCATCTCCCAGAGTTGCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

329

Amino Acids

38.27

Weight (kDa)

7.62

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 202 - 270 3.7e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AasI GACNNNNNNGTC 1 cut(s) 269
Acc16I TGCGCA 1 cut(s) 840
Acc36I ACCTGC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 624
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 255
AciI CCGC 3 cut(s) 4, 36, 236
AclWI GGATC 2 cut(s) 857, 938
AcsI RAATTY 2 cut(s) 571, 819
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 1 cut(s) 889
AfiI CCNNNNNNNGG 6 cut(s) 284, 452, 524, 624, 627, 714
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 5 cut(s) 103, 117, 173, 424, 476
AhdI GACNNNNNGTC 1 cut(s) 449
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 7 cut(s) 78, 301, 479, 544, 671, 836, 919
AluI AGCT 7 cut(s) 78, 301, 479, 544, 671, 836, 919
Alw21I GWGCWC 2 cut(s) 652, 728
Alw26I GTCTC 2 cut(s) 618, 819
Alw44I GTGCAC 1 cut(s) 648
AlwI GGATC 2 cut(s) 857, 938
AoxI GGCC 1 cut(s) 935
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 2 cut(s) 596, 836
ApoI RAATTY 2 cut(s) 571, 819
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 2 cut(s) 129, 505
AvaII GGWCC 2 cut(s) 129, 505
BaeGI GKGCMC 1 cut(s) 652
Bbv12I GWGCWC 2 cut(s) 652, 728
BbvI GCAGC 2 cut(s) 608, 823
BccI CCATC 2 cut(s) 844, 976
BciT130I CCWGG 1 cut(s) 447
BclI TGATCA 3 cut(s) 154, 187, 913
BcoDI GTCTC 2 cut(s) 618, 819
BfmI CTRYAG 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 4 cut(s) 36, 236, 597, 837
BlsI GCNGC 4 cut(s) 37, 237, 598, 838
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 2 cut(s) 129, 505
BmeRI GACNNNNNGTC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 129, 505
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 4 cut(s) 294, 550, 704, 710
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 6 cut(s) 284, 452, 524, 624, 627, 714
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 877, 955
BseLI CCNNNNNNNGG 6 cut(s) 284, 452, 524, 624, 627, 714
BseMII CTCAG 3 cut(s) 222, 860, 882
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 2 cut(s) 608, 823
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 937
BsiHKAI GWGCWC 2 cut(s) 652, 728
BslI CCNNNNNNNGG 6 cut(s) 284, 452, 524, 624, 627, 714
BsmAI GTCTC 2 cut(s) 618, 819
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 1 cut(s) 937
Bsp1286I GDGCHC 2 cut(s) 652, 728
Bsp143I GATC 6 cut(s) 154, 187, 370, 862, 913, 930
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 3 cut(s) 4, 36, 236
BspANI GGCC 1 cut(s) 937
BspCNI CTCAG 3 cut(s) 223, 859, 883
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 507
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 2 cut(s) 857, 938
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 6 cut(s) 154, 187, 370, 862, 913, 930
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 658
Bst6I CTCTTC 1 cut(s) 900
BstACI GRCGYC 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 581
BstDEI CTNAG 4 cut(s) 231, 747, 846, 891
BstDSI CCRYGG 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 712
BstF5I GGATG 2 cut(s) 877, 955
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 6 cut(s) 157, 190, 373, 865, 916, 933
BstMAI GTCTC 2 cut(s) 618, 819
BstMBI GATC 6 cut(s) 154, 187, 370, 862, 913, 930
BstMWI GCNNNNNNNGC 1 cut(s) 596
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 779
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 608, 823
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuRI GGCC 1 cut(s) 937
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 877, 955
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 581
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 2 cut(s) 129, 505
CseI GACGC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 888
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 5 cut(s) 158, 283, 338, 395, 808
CviQI GTAC 1 cut(s) 888
DdeI CTNAG 4 cut(s) 231, 747, 846, 891
DpnI GATC 6 cut(s) 156, 189, 372, 864, 915, 932
DpnII GATC 6 cut(s) 154, 187, 370, 862, 913, 930
DraI TTTAAA 1 cut(s) 556
DrdI GACNNNNNNGTC 1 cut(s) 269
DriI GACNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 900
Eam1105I GACNNNNNGTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 900
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 129, 505
EcoNI CCTNNNNNAGG 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 5 cut(s) 161, 286, 341, 398, 811
FatI CATG 5 cut(s) 157, 282, 337, 394, 807
FbaI TGATCA 3 cut(s) 154, 187, 913
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 4 cut(s) 36, 236, 597, 837
FokI GGATG 2 cut(s) 884, 962
Fsp4HI GCNGC 4 cut(s) 36, 236, 597, 837
FspI TGCGCA 1 cut(s) 840
GlaI GCGC 1 cut(s) 840
GluI GCNGC 4 cut(s) 36, 236, 597, 837
HaeIII GGCC 1 cut(s) 937
HgaI GACGC 1 cut(s) 439
HhaI GCGC 1 cut(s) 841
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 5 cut(s) 161, 286, 341, 398, 811
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 3 cut(s) 48, 202, 424
Hpy166II GTNNAC 3 cut(s) 129, 262, 650
Hpy188I TCNGA 4 cut(s) 232, 455, 536, 849
Hpy188III TCNNGA 3 cut(s) 85, 96, 824
Hpy8I GTNNAC 3 cut(s) 129, 262, 650
Hpy99I CGWCG 1 cut(s) 455
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4V TGCA 6 cut(s) 381, 484, 563, 596, 650, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 596
HpyF3I CTNAG 4 cut(s) 231, 747, 846, 891
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 5 cut(s) 161, 286, 341, 398, 811
HspAI GCGC 1 cut(s) 839
Ksp22I TGATCA 3 cut(s) 154, 187, 913
Kzo9I GATC 6 cut(s) 154, 187, 370, 862, 913, 930
LmnI GCTCC 2 cut(s) 341, 723
LpnPI CCDG 8 cut(s) 81, 279, 396, 432, 459, 613, 721, 919
Lsp1109I GCAGC 2 cut(s) 608, 823
LweI GCATC 4 cut(s) 294, 550, 704, 710
MalI GATC 6 cut(s) 156, 189, 372, 864, 915, 932
MboI GATC 6 cut(s) 154, 187, 370, 862, 913, 930
MboII GAAGA 3 cut(s) 100, 185, 917
MfeI CAATTG 2 cut(s) 107, 591
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 2 cut(s) 652, 728
MluI ACGCGT 1 cut(s) 253
MmeI TCCRAC 3 cut(s) 302, 433, 542
MnlI CCTC 2 cut(s) 438, 804
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 3 cut(s) 555, 675, 816
MslI CAYNNNNRTG 1 cut(s) 948
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 2 cut(s) 107, 591
Mva1269I GAATGC 1 cut(s) 841
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 596
NcoI CCATGG 1 cut(s) 282
NdeII GATC 6 cut(s) 154, 187, 370, 862, 913, 930
NlaIII CATG 5 cut(s) 161, 286, 341, 398, 811
NlaIV GGNNCC 1 cut(s) 507
NsbI TGCGCA 1 cut(s) 840
PctI GAATGC 1 cut(s) 841
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 48, 202, 424
PflMI CCANNNNNTGG 1 cut(s) 624
PkrI GCNGC 4 cut(s) 37, 237, 598, 838
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 129, 505
PsuI RGATCY 1 cut(s) 862
RsaI GTAC 1 cut(s) 889
RsaNI GTAC 1 cut(s) 888
RseI CAYNNNNRTG 1 cut(s) 948
SalI GTCGAC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 555, 675, 816
SatI GCNGC 4 cut(s) 36, 236, 597, 837
Sau3AI GATC 6 cut(s) 154, 187, 370, 862, 913, 930
Sau96I GGNCC 2 cut(s) 129, 505
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 2 cut(s) 652, 728
SfaNI GCATC 4 cut(s) 294, 550, 704, 710
SfcI CTRYAG 1 cut(s) 779
SinI GGWCC 2 cut(s) 129, 505
SmiMI CAYNNNNRTG 1 cut(s) 948
SsiI CCGC 3 cut(s) 4, 36, 236
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 658
TaqI TCGA 4 cut(s) 46, 261, 430, 823
TauI GCSGC 2 cut(s) 38, 238
TfiI GAWTC 3 cut(s) 48, 202, 424
Tru1I TTAA 3 cut(s) 555, 675, 816
Tru9I TTAA 3 cut(s) 555, 675, 816
TscAI CASTG 1 cut(s) 157
TseI GCWGC 2 cut(s) 596, 836
TspDTI ATGAA 6 cut(s) 52, 57, 731, 932, 939, 972
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 624
VneI GTGCAC 1 cut(s) 648
VpaK11BI GGWCC 2 cut(s) 129, 505
XagI CCTNNNNNAGG 1 cut(s) 712
XapI RAATTY 2 cut(s) 571, 819
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.