Rmu_sc0003206.1_g000001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003206.1
OG0000220
Physical Location & Seq
Reverse (-)
16584 .. 17315
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003206.1_g000001.1.cds

Sequence Viewer

Length: 732 bp
atgcctgcacacctcgatgatgaagctggaagacctcttcaacaagttgtgaaaactgcaactaatgctggaatcaacgtagagagagtcttatctgaagaagttgttaaaaacccagaagataattcagatagtgatgatgcatggggtggtacaacaattccagctagttttgatgatggtggagagggtggaagcggaacaggtggtggaggtaaaagatatgaatatggacaatcttctgtagatggaggattccaatttacttgtgaagataattttgatcatgccacccaagatgaagaccacggagtgagaacagctggtcatggtgctcaagagaagacccgatatgggaggaggattagaggtgcaactgatgatcaaagtaccacatttgatgtttcttcaatttccttaagttttgactctatcagtttaggcacagagcgcagtgaaatctcaaatgaatctcatgaaggcaacaatcaatttagttatgatgcttatggatataatcaatatggaaaagtatatgatcagtcatccagttgggttcatccttattatccctttataggggaaacagtcggcatctctaaagagatctataactatcaagttcatcactacaattcgcactatatgggtcatatatcttggtctgattattgcattttcgtagaccagcgagcggctgttcaaccgcttagagtctctttttggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

243

Amino Acids

26.93

Weight (kDa)

4.65

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 695
AccI GTMKAC 1 cut(s) 684
AciI CCGC 3 cut(s) 198, 695, 707
AcuI CTGAAG 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 2 cut(s) 154, 391
AfiI CCNNNNNNNGG 4 cut(s) 354, 578, 579, 694
AflII CTTAAG 1 cut(s) 418
AgsI TTSAA 3 cut(s) 41, 411, 704
AluBI AGCT 3 cut(s) 26, 167, 323
AluI AGCT 3 cut(s) 26, 167, 323
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 721
AspLEI GCGC 1 cut(s) 453
BbsI GAAGAC 3 cut(s) 37, 309, 350
Bbv12I GWGCWC 1 cut(s) 337
BccI CCATC 2 cut(s) 173, 242
BclI TGATCA 3 cut(s) 283, 382, 538
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 418
BglII AGATCT 1 cut(s) 606
BisI GCNGC 1 cut(s) 696
BlsI GCNGC 1 cut(s) 697
BmsI GCATC 3 cut(s) 130, 493, 603
BpiI GAAGAC 3 cut(s) 37, 309, 350
BpuEI CTTGAG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 578, 579, 694
Bse1I ACTGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 3 cut(s) 545, 559, 732
BseLI CCNNNNNNNGG 4 cut(s) 354, 578, 579, 694
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 337
BslI CCNNNNNNNGG 4 cut(s) 354, 578, 579, 694
BsmAI GTCTC 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 4 cut(s) 283, 382, 538, 606
BspACI CCGC 3 cut(s) 198, 695, 707
BspHI TCATGA 1 cut(s) 475
BspTI CTTAAG 1 cut(s) 418
BsrBI CCGCTC 1 cut(s) 695
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 4 cut(s) 283, 382, 538, 606
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 418
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 6, 693
BstDEI CTNAG 1 cut(s) 710
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 3 cut(s) 545, 559, 732
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 4 cut(s) 286, 385, 541, 609
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 4 cut(s) 283, 382, 538, 606
BstMWI GCNNNNNNNGC 2 cut(s) 65, 450
BstSFI CTRYAG 1 cut(s) 243
BstV2I GAAGAC 3 cut(s) 37, 309, 350
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 3 cut(s) 545, 559, 732
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 6, 693
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 153, 390
CviAII CATG 4 cut(s) 144, 287, 329, 476
CviJI RGCY 4 cut(s) 26, 167, 323, 698
CviKI_1 RGCY 4 cut(s) 26, 167, 323, 698
CviQI GTAC 2 cut(s) 153, 390
DdeI CTNAG 1 cut(s) 710
DpnI GATC 4 cut(s) 285, 384, 540, 608
DpnII GATC 4 cut(s) 283, 382, 538, 606
DraIII CACNNNGTG 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 145
FaeI CATG 4 cut(s) 147, 290, 332, 479
FatI CATG 4 cut(s) 143, 286, 328, 475
FbaI TGATCA 3 cut(s) 283, 382, 538
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 2 cut(s) 532, 546
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 452
GluI GCNGC 1 cut(s) 696
HhaI GCGC 1 cut(s) 453
Hin1II CATG 4 cut(s) 147, 290, 332, 479
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HinfI GANTC 6 cut(s) 72, 87, 255, 428, 470, 714
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 3 cut(s) 97, 130, 667
Hpy188III TCNNGA 2 cut(s) 338, 476
Hpy8I GTNNAC 1 cut(s) 685
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 8, 59, 143, 374, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 450
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 4 cut(s) 147, 290, 332, 479
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 3 cut(s) 283, 382, 538
Kzo9I GATC 4 cut(s) 283, 382, 538, 606
LpnPI CCDG 9 cut(s) 12, 18, 54, 129, 177, 189, 309, 562, 701
LweI GCATC 3 cut(s) 130, 493, 603
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 78
MalI GATC 4 cut(s) 285, 384, 540, 608
MbiI CCGCTC 1 cut(s) 695
MboI GATC 4 cut(s) 283, 382, 538, 606
MboII GAAGA 9 cut(s) 29, 42, 110, 131, 231, 284, 314, 355, 399
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 7 cut(s) 124, 159, 260, 277, 411, 491, 634
MlyI GAGTC 3 cut(s) 96, 422, 723
MnlI CCTC 8 cut(s) 23, 45, 181, 206, 245, 351, 354, 362
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 2 cut(s) 108, 419
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 323
MspCI CTTAAG 1 cut(s) 418
MwoI GCNNNNNNNGC 2 cut(s) 65, 450
NdeII GATC 4 cut(s) 283, 382, 538, 606
NlaIII CATG 4 cut(s) 147, 290, 332, 479
NsiI ATGCAT 1 cut(s) 145
PagI TCATGA 1 cut(s) 475
PfeI GAWTC 3 cut(s) 72, 255, 470
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 3 cut(s) 95, 422, 722
PpsI GAGTC 3 cut(s) 95, 422, 722
PsuI RGATCY 1 cut(s) 606
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 154, 391
RsaNI GTAC 2 cut(s) 153, 390
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 108, 419
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 4 cut(s) 283, 382, 538, 606
SchI GAGTC 3 cut(s) 96, 422, 723
SduI GDGCHC 1 cut(s) 337
SetI ASST 9 cut(s) 15, 28, 37, 81, 169, 208, 217, 325, 373
SfaNI GCATC 3 cut(s) 130, 493, 603
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 336, 418
SmoI CTYRAG 2 cut(s) 336, 418
Sse9I AATT 7 cut(s) 124, 159, 260, 277, 411, 491, 634
SsiI CCGC 3 cut(s) 198, 695, 707
SspMI CTAG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 15
TasI AATT 7 cut(s) 124, 159, 260, 277, 411, 491, 634
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 3 cut(s) 72, 255, 470
Tru1I TTAA 2 cut(s) 108, 419
Tru9I TTAA 2 cut(s) 108, 419
TscAI CASTG 1 cut(s) 460
TspDTI ATGAA 7 cut(s) 36, 240, 315, 483, 492, 548, 614
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 684
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.