Rh5AG145800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
15391945 .. 15392430
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG145800.1

Sequence Viewer

Length: 486 bp
ATGGCTCTGACTCTCTCTTGGGAGGACTATCGTCTGCTCCTCTCTTTGGTGAGTGGCGGCGACAAAACCTTTCACTTGCTTCTCTTTTCATATTGCAGCGGCGATAAACCTATTCATCTGTATCTCTCTTCAGGTAGAGGAGACATTTTTGCTGATGTTGGTAGAGATGGAGTGCTGGTCGATCAGATATGGCTTGGAGGAGTTCCAATTGGCAGTGATGGTGGATATGCTCGATATCGGATGACTTGTGTTTGTGTTGGCTGTGGTAGCCCCGATCTAGGATTGGTTGATTTCCAAGTTGTGATGACTGGAGAGCCAAAATTTAGGGCGGTGATGGCGACAATCCGAGTGCGAGTCTTCTCGCATCTTTCGTCGTCTATTGGCAAGGATCTCGTGATCAACGGTGATGGCATGACTCTCTGGTTATCGTCAACAGAGGTTGGGCAATTGTTTCTGCCTGTGATGTCAGCAAAGCTCAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.37

Weight (kDa)

5.83

Isoelectric Point (pI)

22.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 99, 329
AclWI GGATC 1 cut(s) 396
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 46, 278
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 320
AsuHPI GGTGA 3 cut(s) 61, 343, 416
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 108
BccI CCATC 4 cut(s) 161, 212, 328, 401
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 278
BisI GCNGC 3 cut(s) 58, 97, 100
BlsI GCNGC 3 cut(s) 59, 98, 101
BmsI GCATC 1 cut(s) 373
BoxI GACNNNNGTC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 278
Bse1I ACTGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 46, 278
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 3 cut(s) 29, 153, 213
BseXI GCAGC 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 46, 278
BsmAI GTCTC 1 cut(s) 135
Bsp143I GATC 4 cut(s) 181, 274, 388, 396
BspACI CCGC 3 cut(s) 57, 99, 329
BspPI GGATC 1 cut(s) 396
BsrI ACTGG 1 cut(s) 313
BssMI GATC 4 cut(s) 181, 274, 388, 396
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 476
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 4 cut(s) 184, 277, 391, 399
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 181, 274, 388, 396
BstMWI GCNNNNNNNGC 2 cut(s) 267, 335
BstPAI GACNNNNGTC 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 220, 484
CviAII CATG 1 cut(s) 412
CviJI RGCY 6 cut(s) 5, 193, 261, 270, 316, 475
CviKI_1 RGCY 6 cut(s) 5, 193, 261, 270, 316, 475
DdeI CTNAG 1 cut(s) 476
DpnI GATC 4 cut(s) 183, 276, 390, 398
DpnII GATC 4 cut(s) 181, 274, 388, 396
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco32I GATATC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 236
FaeI CATG 1 cut(s) 415
FaiI YATR 4 cut(s) 91, 190, 228, 413
FatI CATG 1 cut(s) 411
FbaI TGATCA 1 cut(s) 396
Fnu4HI GCNGC 3 cut(s) 58, 97, 100
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 58, 97, 100
FspBI CTAG 1 cut(s) 278
GluI GCNGC 3 cut(s) 58, 97, 100
GsuI CTGGAG 1 cut(s) 330
Hin1II CATG 1 cut(s) 415
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 3 cut(s) 10, 354, 415
HphI GGTGA 3 cut(s) 61, 343, 416
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 4 cut(s) 9, 186, 240, 347
Hpy188III TCNNGA 1 cut(s) 394
Hpy8I GTNNAC 1 cut(s) 432
Hpy99I CGWCG 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 335
HpyF3I CTNAG 1 cut(s) 476
Hsp92II CATG 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 4 cut(s) 181, 274, 388, 396
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 117, 161, 294, 406, 471
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 278
MalI GATC 4 cut(s) 183, 276, 390, 398
MboI GATC 4 cut(s) 181, 274, 388, 396
MboII GAAGA 2 cut(s) 120, 349
MfeI CAATTG 2 cut(s) 207, 446
MflI RGATCY 1 cut(s) 388
MluCI AATT 3 cut(s) 207, 320, 446
MlyI GAGTC 3 cut(s) 4, 363, 409
MnlI CCTC 5 cut(s) 16, 50, 131, 191, 430
MspA1I CMGCKG 1 cut(s) 99
MunI CAATTG 2 cut(s) 207, 446
MwoI GCNNNNNNNGC 2 cut(s) 267, 335
NdeII GATC 4 cut(s) 181, 274, 388, 396
NlaIII CATG 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PkrI GCNGC 3 cut(s) 59, 98, 101
PleI GAGTC 3 cut(s) 4, 362, 409
PpsI GAGTC 3 cut(s) 4, 362, 409
PshAI GACNNNNGTC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 388
SatI GCNGC 3 cut(s) 58, 97, 100
Sau3AI GATC 4 cut(s) 181, 274, 388, 396
SchI GAGTC 3 cut(s) 4, 363, 409
SetI ASST 5 cut(s) 71, 112, 136, 441, 477
SfaNI GCATC 1 cut(s) 373
Sse9I AATT 3 cut(s) 207, 320, 446
SsiI CCGC 3 cut(s) 57, 99, 329
SspMI CTAG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 404
TaqI TCGA 2 cut(s) 180, 232
TasI AATT 3 cut(s) 207, 320, 446
TauI GCSGC 2 cut(s) 60, 102
TscAI CASTG 2 cut(s) 220, 484
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 78, 104
TspRI CASTG 2 cut(s) 220, 484
XapI RAATTY 1 cut(s) 320
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.