Rmu_sc0005767.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005767.1
Physical Location & Seq
Forward (+)
51677 .. 53001
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005767.1_g000009.1.cds

Sequence Viewer

Length: 378 bp
ctgatagcatggataaagagaaaagattctattaagcaagaaaaggaagctgttcaagatgatattagagaagaactccgcaatgattatcttggcaatcaaacaagtctgtacaatgatgatgacgacaatgatgatgatgatgatggatttcagtatccaccagacatgcaccctgcagaacgacaagattatcgtgctgcacctgaggcatcattcctgcaaatgaacttggctgtatcagtcatacctaggcaaggctgctttgctgatacagaaaacattgacatgaatatcgtagtacccaacaatgaacaagacggtgtccaaaacaatggagataattctgaaacagaggatttggaggaagatttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.34

Weight (kDa)

4.05

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AfaI GTAC 2 cut(s) 113, 303
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 200, 261
Asp700I GAANNNNTTC 2 cut(s) 25, 51
AspA2I CCTAGG 1 cut(s) 251
AvrII CCTAGG 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 207
BbvI GCAGC 2 cut(s) 187, 248
BccI CCATC 1 cut(s) 140
BciVI GTATCC 1 cut(s) 168
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 177
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 2 cut(s) 201, 262
BlnI CCTAGG 1 cut(s) 251
BlsI GCNGC 2 cut(s) 202, 263
BmsI GCATC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 187, 248
BsgI GTGCAG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 111
BspACI CCGC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 323
BstAUI TGTACA 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 187, 248
BstXI CCANNNNNNTGG 1 cut(s) 335
Bsu36I CCTNAGG 1 cut(s) 207
BsuI GTATCC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 112, 302
CviAII CATG 3 cut(s) 9, 169, 289
CviJI RGCY 3 cut(s) 50, 236, 261
CviKI_1 RGCY 3 cut(s) 50, 236, 261
CviQI GTAC 2 cut(s) 112, 302
DdeI CTNAG 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 3 cut(s) 12, 172, 292
FaiI YATR 4 cut(s) 10, 170, 248, 290
FatI CATG 3 cut(s) 8, 168, 288
Fnu4HI GCNGC 2 cut(s) 201, 262
Fsp4HI GCNGC 2 cut(s) 201, 262
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 201, 262
Hin1II CATG 3 cut(s) 12, 172, 292
HinfI GANTC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 4 cut(s) 172, 179, 203, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 3 cut(s) 12, 172, 292
LpnPI CCDG 4 cut(s) 177, 189, 219, 233
Lsp1109I GCAGC 2 cut(s) 187, 248
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 252
MboII GAAGA 1 cut(s) 83
MluCI AATT 1 cut(s) 343
MnlI CCTC 3 cut(s) 202, 349, 358
MroXI GAANNNNTTC 2 cut(s) 25, 51
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 12, 172, 292
NspI RCATGY 1 cut(s) 172
PdmI GAANNNNTTC 2 cut(s) 25, 51
PfeI GAWTC 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 202, 263
PstI CTGCAG 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 2 cut(s) 113, 303
RsaNI GTAC 2 cut(s) 112, 302
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 201, 262
SetI ASST 3 cut(s) 52, 208, 253
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 1 cut(s) 343
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 323
TasI AATT 1 cut(s) 343
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 2 cut(s) 200, 261
TspDTI ATGAA 3 cut(s) 242, 305, 327
Tth111I GACNNNGTC 1 cut(s) 323
XagI CCTNNNNNAGG 1 cut(s) 255
XceI RCATGY 1 cut(s) 172
XmaJI CCTAGG 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 25, 51
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.