RchiOBHm_Chr1g0361971

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
53719155 .. 53719803
649 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58682

Sequence Viewer

Length: 468 bp
ATGGTTGCCAAATATGGCCCCGGTTTTCAACCTCCATCAAGTCATGAGTTAAGGACTTGGATTTTGAAGGAAGAAGTTGAAGATGTTCAAAAGTTGATGGTAGCACACAAAAAAGATTGGAGCCATTATGGATGCACTATTATGTCGGATGGTTGGACGGATGGCAAGAGTAGGGTTATACTAAATTTTTTAGTAAATAGCTCTAAAGGTACATGGTTCTTGAAATCGGTTGATGCATCGGATACAATCAAAAATGGAGAGTTGATGCTAAATTACTTGGATAATATTGTGGAGGAGGTAGGGGAGGAGAATGTTGTCCAAATTGTTACGGACAATGCTTCCAATTATAAGTGGGCGGGAAAGGAACTAATGAAGCATAGAAGCAAATTGTGGTGGACTCCATGTGCGGCTCATTGCATTGACTTGATGTTAGAAGATATTAGCAAAATGAAAGTCTTTGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.77

Weight (kDa)

5.72

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 12 - 154 2.7e-61 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AciI CCGC 2 cut(s) 356, 407
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 6 cut(s) 29, 67, 80, 89, 223, 461
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
AoxI GGCC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 184
ArsI GACNNNNNNTTYG 3 cut(s) 46, 78, 438
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 21
BccI CCATC 4 cut(s) 43, 91, 143, 155
BciVI GTATCC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 21
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 19, 122
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 4 cut(s) 122, 223, 245, 255
BpuMI CCSGG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 3 cut(s) 137, 154, 166
BseMI GCAATG 1 cut(s) 412
BseRI GAGGAG 2 cut(s) 308, 320
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 18
BspACI CCGC 2 cut(s) 356, 407
BspANI GGCC 1 cut(s) 18
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 19, 122
BsrDI GCAATG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 19
BstF5I GGATG 3 cut(s) 137, 154, 166
BstSCI CCNGG 1 cut(s) 19
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 3 cut(s) 137, 154, 166
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 210
CviAII CATG 3 cut(s) 44, 213, 402
CviJI RGCY 4 cut(s) 18, 123, 201, 410
CviKI_1 RGCY 4 cut(s) 18, 123, 201, 410
CviQI GTAC 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 3 cut(s) 47, 216, 405
FaiI YATR 9 cut(s) 15, 45, 129, 143, 179, 214, 348, 378, 403
FatI CATG 3 cut(s) 43, 212, 401
FauI CCCGC 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 3 cut(s) 144, 161, 173
Fsp4HI GCNGC 1 cut(s) 408
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 21
Hin1II CATG 3 cut(s) 47, 216, 405
HinfI GANTC 1 cut(s) 397
HpaII CCGG 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 2 cut(s) 148, 241
Hpy188III TCNNGA 2 cut(s) 44, 220
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 135, 236, 417
Hsp92II CATG 3 cut(s) 47, 216, 405
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 1 cut(s) 34
LweI GCATC 4 cut(s) 122, 223, 245, 255
MaeIII GTNAC 1 cut(s) 325
MboII GAAGA 3 cut(s) 83, 92, 446
MluCI AATT 5 cut(s) 184, 271, 321, 343, 386
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 2 cut(s) 126, 134
MnlI CCTC 4 cut(s) 42, 286, 289, 298
Mph1103I ATGCAT 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 21
NciI CCSGG 1 cut(s) 21
NlaIII CATG 3 cut(s) 47, 216, 405
NlaIV GGNNCC 2 cut(s) 19, 122
NsiI ATGCAT 1 cut(s) 238
PagI TCATGA 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PsiI TTATAA 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 19, 122
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 408
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 21
SetI ASST 4 cut(s) 34, 203, 211, 300
SfaNI GCATC 4 cut(s) 122, 223, 245, 255
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 5 cut(s) 184, 271, 321, 343, 386
SsiI CCGC 2 cut(s) 356, 407
SspI AATATT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 19
TasI AATT 5 cut(s) 184, 271, 321, 343, 386
TauI GCSGC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 386, 464
TspGWI ACGGA 2 cut(s) 173, 344
XapI RAATTY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.