FvH4_6g19751

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000220
Physical Location & Seq
Reverse (-)
13237928 .. 13238315
388 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19751.t1

Sequence Viewer

Length: 279 bp
ATGAAGAGTGGTGGTCTCGACTCTCGAGAAGCAAAGGATAATGTGATAAATGTAAACAACTATATCGATTTACTTCATGTTGCAAGTAAACCATTTCATGATGGCATTGATCCACTTCAAGCTTGGATTATGCCCACACACCTCGATGATGATGATGGCAATCCACCTCCTGAAGTGCAACTCCGGATAGTTCAGATGAGGATGAAGATGGTGGAAGTGGAAAAGGTGGTGGAAATATCGAGTTTGTTTATGGACAATCTTCTACAGTTGGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

93

Amino Acids

10.44

Weight (kDa)

4.58

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 183
AclWI GGATC 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 24
Aor13HI TCCGGA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 24
BccI CCATC 3 cut(s) 95, 149, 202
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 183
BseCI ATCGAT 1 cut(s) 66
BseGI GGATG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 183
BspHI TCATGA 1 cut(s) 97
BspPI GGATC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 20
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 267
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 263
Bsu15I ATCGAT 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 207
CciI TCATGA 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 66
CviAII CATG 2 cut(s) 77, 98
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 24
FaeI CATG 2 cut(s) 80, 101
FaiI YATR 5 cut(s) 63, 78, 99, 131, 251
FatI CATG 2 cut(s) 76, 97
FokI GGATG 1 cut(s) 214
HapII CCGG 1 cut(s) 184
Hin1II CATG 2 cut(s) 80, 101
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 55, 89
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 6 cut(s) 17, 24, 26, 98, 170, 184
Hpy8I GTNNAC 2 cut(s) 55, 89
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 83, 178
Hsp92II CATG 2 cut(s) 80, 101
Kpn2I TCCGGA 1 cut(s) 183
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 183, 197
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 16, 217, 251
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 152, 177, 192
MroI TCCGGA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 1 cut(s) 184
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 80, 101
PaeR7I CTCGAG 1 cut(s) 24
PagI TCATGA 1 cut(s) 97
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 144
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 14
SetI ASST 4 cut(s) 124, 144, 169, 228
SfcI CTRYAG 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 267
TaqI TCGA 5 cut(s) 18, 25, 66, 144, 239
TspDTI ATGAA 4 cut(s) 17, 65, 86, 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XhoI CTCGAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.