RchiOBHm_Chr7g0216181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000220
Physical Location & Seq
Reverse (-)
33792959 .. 33794616
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19343

Sequence Viewer

Length: 771 bp
ATGGCAAGCAGCGGTAGAGGTGGAAATGATCCAACATGGAAGTACGCAACTCCCGTCGAAGAAAATCGAAATGGTACAACATGTATATTTTGTTTTGCCACTTTTAAAAGTGGAGGAATTACAGGATTGAAGAGTCATTTATCGGGTTATGATCCTCACAAGAGTGTAAAGAAATGTGATAAGGTGCCACCGGAGATCAAAACAGAGGAGATAGCATGGATAAAGAGAAAATATTTTATTAAGCAAGAAAAGGCAGCTGTTCAAGATAATATTAGAGAAGAACTCTGCAATGATTATCTTGGCAATCAAACAAGTCTGTACAATGACGATGACGACAATGATGATGATGATGATGGATTTCAGTATCCACCAGACATGCACCCTGCAGAACGACAAGATTATCGTGCTGCAGTAAGACGATCAACCGTAGATCGTGATAAGAACTCTCAGTTTAGTAGAAGTGCAAGATTTCAATTTCCAAAACAATCCAGAGGCGGTAGTAGCAGTCAACAACCGCAACAAGTTGATCAATCAAAAACCTATCAGTACTCATTTCCTGAGCCTCCAGTAGTAATGCCATCAAAAGATAGTCGATCAAAACAAAGCACAATTAAATCATTACTAAAAGGTGATAGAGAACTATTGGCAACAATGGTGTCCAAATACAACATATATGATGCTGTCCCTTTTAACAAAGCTGATTCTCCACATTTCCAAAACATGTTGACTACAACTGGAAATCTAGGTAAATTATATTGTGTCCTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

256

Amino Acids

29.01

Weight (kDa)

8.15

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-BED PF02892 11 - 47 1.3e-06 BED zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 3 cut(s) 12, 495, 515
AclWI GGATC 2 cut(s) 23, 146
AfaI GTAC 4 cut(s) 44, 76, 320, 548
AflIII ACRYGT 2 cut(s) 80, 720
AgsI TTSAA 3 cut(s) 130, 263, 473
AjnI CCWGG 1 cut(s) 762
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 2 cut(s) 257, 698
AluI AGCT 2 cut(s) 257, 698
AlwI GGATC 2 cut(s) 23, 146
ApeKI GCWGC 3 cut(s) 9, 254, 407
AsuHPI GGTGA 1 cut(s) 641
BanI GGYRCC 1 cut(s) 184
BbvI GCAGC 3 cut(s) 21, 266, 394
BccI CCATC 2 cut(s) 347, 586
BciT130I CCWGG 1 cut(s) 764
BciVI GTATCC 1 cut(s) 375
BclI TGATCA 1 cut(s) 526
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 2 cut(s) 384, 408
BfuI GTATCC 1 cut(s) 375
BisI GCNGC 3 cut(s) 10, 255, 408
BlsI GCNGC 3 cut(s) 11, 256, 409
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 1 cut(s) 764
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 1 cut(s) 667
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BpmI CTGGAG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 558
BsaWI WCCGGW 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 566, 739
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 764
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 461, 549
BseNI ACTGG 2 cut(s) 566, 739
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 3 cut(s) 21, 266, 394
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 668
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
BspACI CCGC 3 cut(s) 12, 495, 515
BspCNI CTCAG 2 cut(s) 460, 550
BspLI GGNNCC 1 cut(s) 186
BspMAI CTGCAG 2 cut(s) 388, 412
BspPI GGATC 2 cut(s) 23, 146
BspT107I GGYRCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 2 cut(s) 566, 739
BssMI GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 447, 558
BstKTI GATC 7 cut(s) 31, 154, 198, 422, 433, 529, 596
BstMBI GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 3 cut(s) 84, 379, 724
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 2 cut(s) 384, 408
BstV1I GCAGC 3 cut(s) 21, 266, 394
BsuI GTATCC 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 4 cut(s) 43, 75, 319, 547
CviAII CATG 5 cut(s) 36, 81, 216, 376, 721
CviJI RGCY 3 cut(s) 257, 562, 698
CviKI_1 RGCY 3 cut(s) 257, 562, 698
CviQI GTAC 4 cut(s) 43, 75, 319, 547
DdeI CTNAG 2 cut(s) 447, 558
DpnI GATC 7 cut(s) 30, 153, 197, 421, 432, 528, 595
DpnII GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
DraI TTTAAA 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 762
FaeI CATG 5 cut(s) 39, 84, 219, 379, 724
FaqI GGGAC 1 cut(s) 668
FatI CATG 5 cut(s) 35, 80, 215, 375, 720
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 3 cut(s) 10, 255, 408
Fsp4HI GCNGC 3 cut(s) 10, 255, 408
FspBI CTAG 1 cut(s) 743
GluI GCNGC 3 cut(s) 10, 255, 408
GsuI CTGGAG 1 cut(s) 549
HapII CCGG 1 cut(s) 191
Hin1II CATG 5 cut(s) 39, 84, 219, 379, 724
HincII GTYRAC 2 cut(s) 509, 726
HindII GTYRAC 2 cut(s) 509, 726
HinfI GANTC 2 cut(s) 133, 701
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 641
Hpy166II GTNNAC 2 cut(s) 509, 726
Hpy188III TCNNGA 4 cut(s) 263, 434, 489, 557
Hpy8I GTNNAC 2 cut(s) 509, 726
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 5 cut(s) 288, 379, 386, 410, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
HpyF3I CTNAG 2 cut(s) 447, 558
Hsp92II CATG 5 cut(s) 39, 84, 219, 379, 724
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
LpnPI CCDG 9 cut(s) 108, 204, 384, 396, 502, 570, 579, 720, 749
Lsp1109I GCAGC 3 cut(s) 21, 266, 394
LweI GCATC 1 cut(s) 667
MaeI CTAG 1 cut(s) 743
MalI GATC 7 cut(s) 30, 153, 197, 421, 432, 528, 595
MboI GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
MboII GAAGA 3 cut(s) 71, 142, 290
MluCI AATT 4 cut(s) 117, 473, 609, 749
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 6 cut(s) 11, 107, 165, 199, 485, 573
MseI TTAA 4 cut(s) 105, 240, 612, 690
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 12, 257
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 764
MvaI CCWGG 1 cut(s) 764
MwoI GCNNNNNNNGC 1 cut(s) 501
NdeII GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
NlaIII CATG 5 cut(s) 39, 84, 219, 379, 724
NlaIV GGNNCC 1 cut(s) 186
NspI RCATGY 3 cut(s) 84, 379, 724
OliI CACNNNNGTG 1 cut(s) 162
PciI ACATGT 2 cut(s) 80, 720
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 3 cut(s) 11, 256, 409
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PscI ACATGT 2 cut(s) 80, 720
Psp6I CCWGG 1 cut(s) 762
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 186
PstI CTGCAG 2 cut(s) 388, 412
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 4 cut(s) 44, 76, 320, 548
RsaNI GTAC 4 cut(s) 43, 75, 319, 547
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 4 cut(s) 105, 240, 612, 690
SatI GCNGC 3 cut(s) 10, 255, 408
Sau3AI GATC 7 cut(s) 28, 151, 195, 419, 430, 526, 593
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 764
SetI ASST 7 cut(s) 22, 186, 259, 542, 631, 700, 748
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 2 cut(s) 384, 408
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 4 cut(s) 117, 473, 609, 749
SsiI CCGC 3 cut(s) 12, 495, 515
SspI AATATT 2 cut(s) 233, 271
SspMI CTAG 1 cut(s) 743
StyD4I CCNGG 1 cut(s) 762
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 57, 67, 592
TasI AATT 4 cut(s) 117, 473, 609, 749
TatI WGTACW 2 cut(s) 318, 546
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 4 cut(s) 105, 240, 612, 690
Tru9I TTAA 4 cut(s) 105, 240, 612, 690
TseI GCWGC 3 cut(s) 9, 254, 407
XceI RCATGY 3 cut(s) 84, 379, 724
XspI CTAG 1 cut(s) 743
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.