pycom06g06750

source UniProtKB

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
10819734 .. 10820174
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06750.1

Sequence Viewer

Length: 441 bp
ATGACAGCTCACTTGGATGATGAACAAGGCAACCATGATGCCGTTATAACACAACATTCTGCCCAAGAAGGAGTTGATGTTGATAGAGTCATATCCGAAGATGTTAGGAGTGGACATACTTCATCATTTGAAAGGGATGTGTTTGGCACTCGGCAAGGTCAAAGACGTCCCTTGAGAGACAATGCCCGTACTAGTAGAAAGGAAAGTTCATCTAATTCGTCAGATAATGATGGAGGAAGTAATGCTAGATCAGGAGGTAATGAAGAAGGAAGACAATATATCCCATTTACTATCGAGGCTGATTTTACTCATGCCACCCAAGATGAGGATTATGGATGCAAAGAAGCTGGACCAGGCATTGGCGCAATTGGGAAGCAATGCTCAGGGAAAAGAAGCCAACCAATCAATCCATCTGAAGATGACATGGCGATCAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

15.84

Weight (kDa)

4.84

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AatII GACGTC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 325, 359
AgsI TTSAA 1 cut(s) 131
AhlI ACTAGT 1 cut(s) 191
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 8, 347
AluI AGCT 2 cut(s) 8, 347
Alw26I GTCTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 277
BccI CCATC 2 cut(s) 224, 418
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 171
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 2 cut(s) 192, 246
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 28, 326
BpiI GAAGAC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 359
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 3 cut(s) 22, 142, 341
BseLI CCNNNNNNNGG 2 cut(s) 325, 359
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 325, 359
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 248, 429
BspCNI CTCAG 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 383
BssMI GATC 2 cut(s) 248, 429
BssNI GRCGYC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 3 cut(s) 22, 142, 341
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 2 cut(s) 251, 432
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 248, 429
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstV2I GAAGAC 1 cut(s) 277
BtsCI GGATG 3 cut(s) 22, 142, 341
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 35, 311, 424
CviJI RGCY 4 cut(s) 8, 299, 347, 396
CviKI_1 RGCY 4 cut(s) 8, 299, 347, 396
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 382
DpnI GATC 2 cut(s) 250, 431
DpnII GATC 2 cut(s) 248, 429
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 3 cut(s) 38, 314, 427
FaiI YATR 8 cut(s) 36, 47, 92, 117, 279, 312, 333, 425
FaqI GGGAC 1 cut(s) 153
FatI CATG 3 cut(s) 34, 310, 423
FokI GGATG 3 cut(s) 29, 149, 348
FspBI CTAG 2 cut(s) 192, 246
GlaI GCGC 1 cut(s) 364
HhaI GCGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 3 cut(s) 38, 314, 427
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HinfI GANTC 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 97, 223, 415
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 62, 260
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 339
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 1 cut(s) 166
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 3 cut(s) 38, 314, 427
HspAI GCGC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 248, 429
LpnPI CCDG 5 cut(s) 237, 333, 339, 366, 369
LweI GCATC 2 cut(s) 28, 326
MaeI CTAG 2 cut(s) 192, 246
MaeII ACGT 1 cut(s) 166
MalI GATC 2 cut(s) 250, 431
MboI GATC 2 cut(s) 248, 429
MboII GAAGA 4 cut(s) 110, 275, 282, 428
MfeI CAATTG 1 cut(s) 366
MluCI AATT 2 cut(s) 214, 366
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 4 cut(s) 227, 248, 289, 319
MslI CAYNNNNRTG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 354
NdeII GATC 2 cut(s) 248, 429
NlaIII CATG 3 cut(s) 38, 314, 427
NmeAIII GCCGAG 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 359
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 15
Sau3AI GATC 2 cut(s) 248, 429
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 354
SetI ASST 5 cut(s) 10, 160, 169, 259, 349
SfaNI GCATC 2 cut(s) 28, 326
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
SpeI ACTAGT 1 cut(s) 191
Sse9I AATT 2 cut(s) 214, 366
SspMI CTAG 2 cut(s) 192, 246
StyD4I CCNGG 1 cut(s) 352
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 214, 366
TspDTI ATGAA 4 cut(s) 36, 111, 198, 276
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 350
XspI CTAG 2 cut(s) 192, 246
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.