pycom11g16040

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
17264541 .. 17264996
456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16040.1

Sequence Viewer

Length: 456 bp
ATGCAACACAGGATGAGGACCATGGCCAGTAGGCGGGCAGGACCAGGAATTGGTGCCATAGGGAGGGACTATACCCGTAGAGAAAGAGGCAAGGGGACTTTGTTAAGTCAAGAAGATGACTCGTTATCTATAACTTCGGACTCTGTTGGAGTGAGAAGTAGTAACTATGGTTATACTCATAACCAACCATTTCCCTACCCTTCATATCCCATTCCTGTTGGGATGGAATCGAGCAACTCATGGAAAGAATCCGAGACTCAAACTTCAAATGATTTTGCTTATGGACAACGTCAATCAATCTCGGATCCATATGGATGGCATGTTAACAATTACGTGCAAAACTATTTTGGGGATTTATCATTTGATGACTACTCTTCACAATACACTTACTCTACACACAGAGATGATGAAGATAGTGAAAATTTTGAACCTCATAGGAACTCTATGTGGTACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

17.46

Weight (kDa)

5.25

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 1 cut(s) 34
AclWI GGATC 2 cut(s) 299, 312
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 421
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 3 cut(s) 33, 50, 63
AgsI TTSAA 2 cut(s) 267, 428
AjnI CCWGG 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 299, 312
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 18, 41
AvaII GGWCC 2 cut(s) 18, 41
BalI TGGCCA 1 cut(s) 26
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 53
BccI CCATC 2 cut(s) 217, 309
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 2 cut(s) 18, 41
BmgT120I GGNCC 2 cut(s) 18, 41
BmiI GGNNCC 2 cut(s) 55, 306
BmrFI CCNGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 50, 63
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 3 cut(s) 18, 228, 320
BseLI CCNNNNNNNGG 3 cut(s) 33, 50, 63
BseNI ACTGG 1 cut(s) 27
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 53
BslFI GGGAC 2 cut(s) 80, 109
BslI CCNNNNNNNGG 3 cut(s) 33, 50, 63
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 80, 109
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 55, 306
BspPI GGATC 2 cut(s) 299, 312
BspT107I GGYRCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 18, 228, 320
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 315
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 18, 228, 320
Cac8I GCNNGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 18, 41
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 22, 240, 320
CviJI RGCY 1 cut(s) 26
CviKI_1 RGCY 1 cut(s) 26
CviQI GTAC 1 cut(s) 451
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 18, 41
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 25, 243, 323
FaqI GGGAC 2 cut(s) 80, 109
FatI CATG 3 cut(s) 21, 239, 319
FauI CCCGC 1 cut(s) 27
FauNDI CATATG 1 cut(s) 310
FokI GGATG 3 cut(s) 25, 235, 327
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 3 cut(s) 25, 243, 323
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 119, 140, 227, 248, 256
HpaI GTTAAC 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 139, 253, 304
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 210
HpyCH4IV ACGT 2 cut(s) 289, 333
HpyCH4V TGCA 2 cut(s) 4, 337
HpySE526I ACGT 2 cut(s) 289, 333
Hsp92II CATG 3 cut(s) 25, 243, 323
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 1 cut(s) 304
LpnPI CCDG 5 cut(s) 24, 30, 40, 57, 228
MaeII ACGT 2 cut(s) 289, 333
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 125, 366, 422
MflI RGATCY 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 3 cut(s) 48, 328, 421
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 3 cut(s) 113, 134, 250
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 9, 57, 80, 441
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 2 cut(s) 104, 324
MslI CAYNNNNRTG 2 cut(s) 313, 402
Msp20I TGGCCA 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 310
NdeII GATC 1 cut(s) 304
NlaIII CATG 3 cut(s) 25, 243, 323
NlaIV GGNNCC 2 cut(s) 55, 306
NspI RCATGY 1 cut(s) 323
PfeI GAWTC 2 cut(s) 227, 248
PflFI GACNNNGTC 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 50
PleI GAGTC 3 cut(s) 113, 134, 250
PpsI GAGTC 3 cut(s) 113, 134, 250
Ppu21I YACGTR 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 55, 306
PspPI GGNCC 2 cut(s) 18, 41
PsuI RGATCY 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 288
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 313, 402
SaqAI TTAA 2 cut(s) 104, 324
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 18, 41
SchI GAGTC 3 cut(s) 113, 134, 250
ScrFI CCNGG 1 cut(s) 45
SetI ASST 3 cut(s) 292, 336, 433
SinI GGWCC 2 cut(s) 18, 41
SmiMI CAYNNNNRTG 2 cut(s) 313, 402
Sse9I AATT 3 cut(s) 48, 328, 421
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 2 cut(s) 292, 336
TaqI TCGA 1 cut(s) 230
TasI AATT 3 cut(s) 48, 328, 421
TfiI GAWTC 2 cut(s) 227, 248
Tru1I TTAA 2 cut(s) 104, 324
Tru9I TTAA 2 cut(s) 104, 324
TspDTI ATGAA 2 cut(s) 192, 423
Tth111I GACNNNGTC 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 18, 41
XapI RAATTY 1 cut(s) 421
XceI RCATGY 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.