RLG00000022782

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
12133209 .. 12135932
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022782

Sequence Viewer

Length: 717 bp
ATGAAGAGAGAAGTAAGAGATCAGTCTGATGAAAGTGATGGAAGTGGTTATAAATTATCAAGAGGCACTAATGAAAAATCGATTGATGATGATGATGATGATGATGGTGATGGTGATGGTGATGGTGATAATACTGGTGGTGGTAGTAGCCGTCGTGGCTATGGAGGTAGTGGACGAGATAACTCGTGTGACAATGGTAGTTATGACTATACTAATCGTGAGGCGAATTATGGAAATGACAGGGGGAGTAGCAAATCATGGCACTATAACCAATATCGTAGTGATGATCATTCTACTTATCCTGGTGCAAATCATGAATACAATTCTAGAGCAAGGGATATACAAGGAAGACGCTATAGGCATTTGTCTCTAAATGAGTTTGAATCACTTGCTTCAAGTCTTGGCTCAATGGACATAGGAACTCAATATAGTGATAACCCTAAACCATTCCATTCTCACGAAATTAGATCAAGCTCACAAGGTTTGAGGGAGGCTGGAGATGAAGAACACAGATGCAAGGGGGGGGAAGAACATAGATGTAATGGAGGTCGGAGATGGCCGAATATTGCCCGGAGATTGCCGGATTTTAGCCGACGAGTTCTTGACTTCTTGCCGGAAACAAAAATAGCAGAGGTCGAATTCACCATCTGCATATCGGCGGAGATGCATCAGATATTGGAGAAATCAGTGGAGAACTACCAGAAAGAAGTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.89

Weight (kDa)

5.16

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AciI CCGC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 557
AcsI RAATTY 1 cut(s) 638
AgsI TTSAA 2 cut(s) 383, 396
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 1 cut(s) 474
AluI AGCT 1 cut(s) 474
Alw26I GTCTC 1 cut(s) 372
AoxI GGCC 1 cut(s) 557
ApoI RAATTY 1 cut(s) 638
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 5 cut(s) 119, 125, 131, 137, 634
BauI CACGAG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 355
BccI CCATC 7 cut(s) 32, 98, 104, 110, 116, 549, 653
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 303, 571
BmrFI CCNGG 2 cut(s) 303, 571
BmsI GCATC 3 cut(s) 503, 654, 676
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 571
Bsa29I ATCGAT 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 80
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 1 cut(s) 559
BshVI ATCGAT 1 cut(s) 80
BsiSI CCGG 3 cut(s) 571, 581, 614
BsmAI GTCTC 1 cut(s) 372
BsnI GGCC 1 cut(s) 559
Bsp143I GATC 3 cut(s) 19, 286, 467
BspACI CCGC 1 cut(s) 659
BspANI GGCC 1 cut(s) 559
BspDI ATCGAT 1 cut(s) 80
BspHI TCATGA 1 cut(s) 313
BsrI ACTGG 1 cut(s) 139
BssMI GATC 3 cut(s) 19, 286, 467
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 303
BstKTI GATC 3 cut(s) 22, 289, 470
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 3 cut(s) 19, 286, 467
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 301, 569
BstSFI CTRYAG 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 355
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 1 cut(s) 559
BsuTUI ATCGAT 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 693
CciI TCATGA 1 cut(s) 313
ClaI ATCGAT 1 cut(s) 80
CseI GACGC 1 cut(s) 360
CviAII CATG 2 cut(s) 258, 314
CviJI RGCY 7 cut(s) 150, 159, 405, 474, 494, 559, 591
CviKI_1 RGCY 7 cut(s) 150, 159, 405, 474, 494, 559, 591
DpnI GATC 3 cut(s) 21, 288, 469
DpnII GATC 3 cut(s) 19, 286, 467
EaeI YGGCCR 1 cut(s) 557
EciI GGCGGA 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 669
FaeI CATG 2 cut(s) 261, 317
FatI CATG 2 cut(s) 257, 313
FbaI TGATCA 1 cut(s) 286
FspBI CTAG 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 559
HapII CCGG 3 cut(s) 571, 581, 614
HgaI GACGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 261, 317
HinfI GANTC 1 cut(s) 383
HpaII CCGG 3 cut(s) 571, 581, 614
HphI GGTGA 5 cut(s) 119, 125, 131, 137, 634
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 28, 552, 672
Hpy188III TCNNGA 6 cut(s) 60, 218, 314, 327, 458, 602
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 2 cut(s) 156, 597
HpyCH4V TGCA 4 cut(s) 308, 516, 651, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 261, 317
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 19, 286, 467
LpnPI CCDG 9 cut(s) 120, 226, 288, 315, 480, 584, 594, 627, 713
LweI GCATC 3 cut(s) 503, 654, 676
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 188
MalI GATC 3 cut(s) 21, 288, 469
MboI GATC 3 cut(s) 19, 286, 467
MboII GAAGA 4 cut(s) 16, 360, 515, 539
MluCI AATT 6 cut(s) 53, 226, 322, 462, 638, 712
MmeI TCCRAC 1 cut(s) 530
MnlI CCTC 7 cut(s) 56, 158, 214, 480, 484, 539, 625
Mph1103I ATGCAT 1 cut(s) 669
MspI CCGG 3 cut(s) 571, 581, 614
MspR9I CCNGG 2 cut(s) 303, 571
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 571
NdeII GATC 3 cut(s) 19, 286, 467
NlaIII CATG 2 cut(s) 261, 317
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 669
PagI TCATGA 1 cut(s) 313
PfeI GAWTC 1 cut(s) 383
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
Sau3AI GATC 3 cut(s) 19, 286, 467
ScrFI CCNGG 2 cut(s) 303, 571
SetI ASST 5 cut(s) 169, 476, 484, 550, 636
SfaNI GCATC 3 cut(s) 503, 654, 676
SfcI CTRYAG 1 cut(s) 355
Sse9I AATT 6 cut(s) 53, 226, 322, 462, 638, 712
SsiI CCGC 1 cut(s) 659
SspI AATATT 1 cut(s) 565
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 301, 569
TaqI TCGA 2 cut(s) 80, 636
TasI AATT 6 cut(s) 53, 226, 322, 462, 638, 712
TfiI GAWTC 1 cut(s) 383
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 5 cut(s) 17, 45, 87, 330, 516
TspRI CASTG 1 cut(s) 693
XapI RAATTY 1 cut(s) 638
XbaI TCTAGA 1 cut(s) 326
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.