RLG00000001765

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000220
Physical Location & Seq
Forward (+)
20352290 .. 20352991
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001765

Sequence Viewer

Length: 645 bp
ATGGGTCTGACTCTCTGTAGAGAGGACTATCGTCAGTTCCTTTCTTCGGTGAGGGGCAACGACAAATCTCCTCACCTGCCCTGCTTGTCATATTGCAGCGGCGATAAAATTATTCGCCTGACTTCCTTTTTGGGTGGAAAAGGCATTTCTGCTGATGTTTGTAGGGATGGGGTGCTGGCTGATCGGATCTGGTTTGGAGGAGATCCATATGGCAATGATGGTGGAGCGGCTCTCGATCCGACGATTTGGGTTGTGAAGACTGGAGGGCTAAAGTTGGTGGTGGTGACGCCGCCAATCCGAGTGCGAGTCTTCTCGCATTTTTCATCATCTACGAGCGAGAACTTCGAGGTCAGCATAGTTGGTATGCCTCTTTGGTTGTCGACGACAGAGATTGAGAGGTTGGGTTTGCCTGCCTCAATAATGAAGCTGTTGTCTGTGAGACCGGTTTCGCCGCGATGTTTCTTTGCCTGGGTTGTGGCTTATACCGCCTTTAGTGGTGACAACGGCAGCGTGGGAGATGGTGGCAGGTGCTGGTGTGTTTCTTCTATTTCTGACGACAAAGGCGGTGGTAGGCCGATGACGGCGGTGTGGAAGATGTTCACTGGGCCTCTAGGGTTTGTTCTAGTGGCTCTTGGGGGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

22.92

Weight (kDa)

8.5

Isoelectric Point (pI)

26.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 84, 516
Acc36I ACCTGC 2 cut(s) 84, 516
AccBSI CCGCTC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 380
AccII CGCG 1 cut(s) 454
AciI CCGC 7 cut(s) 99, 227, 290, 452, 486, 564, 584
AclWI GGATC 3 cut(s) 194, 197, 230
AcyI GRCGYC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 46
AgeI ACCGGT 1 cut(s) 442
AjnI CCWGG 1 cut(s) 467
AluBI AGCT 1 cut(s) 427
AluI AGCT 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 3 cut(s) 194, 197, 230
AlwNI CAGNNNCTG 1 cut(s) 531
AoxI GGCC 2 cut(s) 572, 605
ApeKI GCWGC 2 cut(s) 96, 507
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AsiGI ACCGGT 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 605
AsuHPI GGTGA 4 cut(s) 61, 65, 295, 509
BbsI GAAGAC 2 cut(s) 263, 301
BbvI GCAGC 2 cut(s) 108, 519
BccI CCATC 3 cut(s) 161, 212, 512
BceAI ACGGC 2 cut(s) 520, 597
BciT130I CCWGG 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 3 cut(s) 611, 623, 643
BfmI CTRYAG 1 cut(s) 16
BfuAI ACCTGC 2 cut(s) 84, 516
BisI GCNGC 6 cut(s) 97, 100, 228, 290, 452, 508
BlsI GCNGC 6 cut(s) 98, 101, 229, 291, 453, 509
Bme1390I CCNGG 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 605
BmrFI CCNGG 1 cut(s) 469
BmrI ACTGGG 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 612
BoxI GACNNNNGTC 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 263, 301
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 265, 607
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 2 cut(s) 265, 607
BseRI GAGGAG 2 cut(s) 60, 213
BseXI GCAGC 2 cut(s) 108, 519
Bsh1236I CGCG 1 cut(s) 454
BshFI GGCC 2 cut(s) 574, 607
BshTI ACCGGT 1 cut(s) 442
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 433
BsnI GGCC 2 cut(s) 574, 607
Bso31I GGTCTC 1 cut(s) 433
Bsp143I GATC 4 cut(s) 181, 186, 202, 235
BspACI CCGC 7 cut(s) 99, 227, 290, 452, 486, 564, 584
BspANI GGCC 2 cut(s) 574, 607
BspFNI CGCG 1 cut(s) 454
BspMI ACCTGC 2 cut(s) 84, 516
BspPI GGATC 3 cut(s) 194, 197, 230
BspTNI GGTCTC 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 2 cut(s) 265, 607
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 4 cut(s) 181, 186, 202, 235
BssNI GRCGYC 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 469
BstACI GRCGYC 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 177, 411
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 4 cut(s) 184, 189, 205, 238
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 4 cut(s) 181, 186, 202, 235
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 1 cut(s) 469
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 2 cut(s) 108, 519
BstV2I GAAGAC 2 cut(s) 263, 301
BstX2I RGATCY 2 cut(s) 186, 202
BstYI RGATCY 2 cut(s) 186, 202
BsuRI GGCC 2 cut(s) 574, 607
BtgZI GCGATG 1 cut(s) 469
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 2 cut(s) 84, 516
Cac8I GCNNGC 2 cut(s) 177, 411
CaiI CAGNNNCTG 1 cut(s) 531
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 1 cut(s) 295
CspAI ACCGGT 1 cut(s) 442
CspCI CAANNNNNGTGG 4 cut(s) 202, 237, 547, 582
CviJI RGCY 8 cut(s) 179, 230, 268, 427, 479, 574, 607, 629
CviKI_1 RGCY 8 cut(s) 179, 230, 268, 427, 479, 574, 607, 629
DpnI GATC 4 cut(s) 183, 188, 204, 237
DpnII GATC 4 cut(s) 181, 186, 202, 235
Eco31I GGTCTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 467
FaiI YATR 6 cut(s) 91, 208, 210, 356, 365, 483
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 6 cut(s) 97, 100, 228, 290, 452, 508
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 6 cut(s) 97, 100, 228, 290, 452, 508
FspBI CTAG 3 cut(s) 611, 623, 643
GluI GCNGC 6 cut(s) 97, 100, 228, 290, 452, 508
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 2 cut(s) 574, 607
HapII CCGG 1 cut(s) 443
HgaI GACGC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 2 cut(s) 10, 306
HpaII CCGG 1 cut(s) 443
HphI GGTGA 4 cut(s) 61, 65, 295, 509
Hpy166II GTNNAC 2 cut(s) 381, 600
Hpy188I TCNGA 5 cut(s) 9, 186, 240, 299, 553
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 381, 600
Hpy99I CGWCG 2 cut(s) 244, 385
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
Hsp92I GRCGYC 1 cut(s) 287
Kzo9I GATC 4 cut(s) 181, 186, 202, 235
LmnI GCTCC 1 cut(s) 224
Lsp1109I GCAGC 2 cut(s) 108, 519
MaeI CTAG 3 cut(s) 611, 623, 643
MaeIII GTNAC 2 cut(s) 283, 497
MalI GATC 4 cut(s) 183, 188, 204, 237
MbiI CCGCTC 1 cut(s) 227
MboI GATC 4 cut(s) 181, 186, 202, 235
MboII GAAGA 5 cut(s) 36, 268, 301, 534, 604
MflI RGATCY 2 cut(s) 186, 202
MluCI AATT 1 cut(s) 108
MlyI GAGTC 2 cut(s) 4, 315
MmeI TCCRAC 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 469
MvaI CCWGG 1 cut(s) 469
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeI CATATG 1 cut(s) 208
NdeII GATC 4 cut(s) 181, 186, 202, 235
NmuCI GTSAC 2 cut(s) 283, 497
PaqCI CACCTGC 2 cut(s) 84, 516
PdmI GAANNNNTTC 1 cut(s) 596
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 6 cut(s) 98, 101, 229, 291, 453, 509
PleI GAGTC 2 cut(s) 4, 314
PpsI GAGTC 2 cut(s) 4, 314
PshAI GACNNNNGTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 467
PspGI CCWGG 1 cut(s) 467
PspPI GGNCC 1 cut(s) 605
PstNI CAGNNNCTG 1 cut(s) 531
PsuI RGATCY 2 cut(s) 186, 202
SalI GTCGAC 1 cut(s) 379
SatI GCNGC 6 cut(s) 97, 100, 228, 290, 452, 508
Sau3AI GATC 4 cut(s) 181, 186, 202, 235
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 2 cut(s) 4, 315
ScrFI CCNGG 1 cut(s) 469
SetI ASST 5 cut(s) 78, 351, 401, 429, 530
SfcI CTRYAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 108
SsiI CCGC 7 cut(s) 99, 227, 290, 452, 486, 564, 584
SspMI CTAG 3 cut(s) 611, 623, 643
StyD4I CCNGG 1 cut(s) 467
TaqI TCGA 3 cut(s) 234, 345, 380
TasI AATT 1 cut(s) 108
TauI GCSGC 4 cut(s) 102, 230, 292, 454
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 2 cut(s) 283, 497
TseI GCWGC 2 cut(s) 96, 507
Tsp45I GTSAC 2 cut(s) 283, 497
TspDTI ATGAA 2 cut(s) 312, 437
TspRI CASTG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 3 cut(s) 611, 623, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.