RLG00000002860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000220
Physical Location & Seq
Forward (+)
40817568 .. 40818377
810 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002860

Sequence Viewer

Length: 720 bp
ATGGCTCTGACTCTCTCTCGAGAGGACTATCGTCTGTTCCTCTCTTTGGTGAGCGGCGGCGACAAAGCCTTTCATCTACTTCTCTTTTCATATTGCGGCGGCCATAAACCTATTCATCTGTCTCTCTCTTCGGGTAGAGGAGGCGTTATTGCTGATGTTGGTAGAGATGGAGTGCTGGTCGATCAGATCTGGCTTGGAAGAGTCCCAATTGGCAGTGATGGTGGATTTGCTCGCGATCAGATGACTTGTGTGTGTGATGGCTGTGGTAGCCTCGATTTGGGATTGGTTGATTTCCAGGTTATGATGACTCGAGGGCCAAAATTTAGGGTGGTGATGCCGACGATCCGAGTGCGAGTCTTCTCACATCTCTCGTCGTCTATTAGCAAGGATCTCATGGTCGATGGTGATGGCATGACTCTCTGGTTGTCGTCGACAGAGGTCGGTGACGTGGGGTGCGGTGGTATGTGCTGGTGTGCTGGTGGCAACGACGACAGTAGGGGCGGTGGCAATCCGAGGACGGTGGCGTGGGAGATGGTTATTAGGATTCTAGGGTTTGCTCTAGTGGCTCTTAGTGGGCCTGGGCTCAATGAAGTTTGGGCCTTGAGGACTGTTATTGGGTCCCTGGATTGGACTTTTGCTTATAGTCAGGCATTTTGGGCTCCACTTTGGATGTTGGGCTTTTTATGGGCTGGACATGGAATTGCTTGTGTCTCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

25.71

Weight (kDa)

5.91

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 431
AccII CGCG 1 cut(s) 234
AciI CCGC 6 cut(s) 54, 57, 96, 99, 456, 501
AclWI GGATC 2 cut(s) 337, 396
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 320
AfiI CCNNNNNNNGG 3 cut(s) 46, 277, 627
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 3 cut(s) 294, 577, 621
Alw26I GTCTC 2 cut(s) 126, 715
AlwI GGATC 2 cut(s) 337, 396
Ama87I CYCGRG 2 cut(s) 18, 309
AoxI GGCC 4 cut(s) 100, 314, 575, 597
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 4 cut(s) 314, 575, 597, 618
AsuHPI GGTGA 4 cut(s) 61, 343, 416, 455
AvaI CYCGRG 2 cut(s) 18, 309
AvaII GGWCC 1 cut(s) 618
BanII GRGCYC 2 cut(s) 585, 661
BbsI GAAGAC 1 cut(s) 349
BccI CCATC 6 cut(s) 161, 212, 251, 395, 401, 526
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 3 cut(s) 296, 579, 623
BcoDI GTCTC 2 cut(s) 126, 715
BfaI CTAG 3 cut(s) 548, 560, 718
BglII AGATCT 1 cut(s) 186
BisI GCNGC 4 cut(s) 55, 58, 97, 100
BlsI GCNGC 4 cut(s) 56, 59, 98, 101
Bme1390I CCNGG 3 cut(s) 296, 579, 623
Bme18I GGWCC 1 cut(s) 618
BmeT110I CYCGRG 2 cut(s) 18, 309
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 4 cut(s) 314, 575, 597, 618
BmiI GGNNCC 3 cut(s) 619, 620, 660
BmrFI CCNGG 3 cut(s) 296, 579, 623
BmsI GCATC 1 cut(s) 324
BoxI GACNNNNGTC 2 cut(s) 30, 437
BpiI GAAGAC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 622
BsaJI CCNNGG 3 cut(s) 512, 578, 621
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 277, 627
BseBI CCWGG 3 cut(s) 296, 579, 623
BseDI CCNNGG 3 cut(s) 512, 578, 621
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 3 cut(s) 46, 277, 627
BseRI GAGGAG 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 4 cut(s) 102, 316, 577, 599
BsiHKCI CYCGRG 2 cut(s) 18, 309
BslFI GGGAC 2 cut(s) 188, 604
BslI CCNNNNNNNGG 3 cut(s) 46, 277, 627
BsmAI GTCTC 2 cut(s) 126, 715
BsmFI GGGAC 2 cut(s) 188, 604
BsnI GGCC 4 cut(s) 102, 316, 577, 599
BsoBI CYCGRG 2 cut(s) 18, 309
Bsp1286I GDGCHC 2 cut(s) 585, 661
Bsp143I GATC 5 cut(s) 181, 186, 235, 342, 388
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 6 cut(s) 54, 57, 96, 99, 456, 501
BspANI GGCC 4 cut(s) 102, 316, 577, 599
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 619, 620, 660
BspPI GGATC 2 cut(s) 337, 396
BsrBI CCGCTC 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 512, 578, 621
BssMI GATC 5 cut(s) 181, 186, 235, 342, 388
Bst2UI CCWGG 3 cut(s) 296, 579, 623
Bst4CI ACNGT 3 cut(s) 494, 520, 610
Bst6I CTCTTC 2 cut(s) 133, 193
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 569
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 5 cut(s) 184, 189, 238, 345, 391
BstMAI GTCTC 2 cut(s) 126, 715
BstMBI GATC 5 cut(s) 181, 186, 235, 342, 388
BstMWI GCNNNNNNNGC 3 cut(s) 267, 563, 656
BstNI CCWGG 3 cut(s) 296, 579, 623
BstPAI GACNNNNGTC 2 cut(s) 30, 437
BstSCI CCNGG 3 cut(s) 294, 577, 621
BstUI CGCG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 2 cut(s) 186, 388
BstYI RGATCY 2 cut(s) 186, 388
BsuRI GGCC 4 cut(s) 102, 316, 577, 599
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 1 cut(s) 675
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 232
Cfr13I GGNCC 4 cut(s) 314, 575, 597, 618
CviAII CATG 3 cut(s) 394, 412, 695
DdeI CTNAG 1 cut(s) 569
DpnI GATC 5 cut(s) 183, 188, 237, 344, 390
DpnII GATC 5 cut(s) 181, 186, 235, 342, 388
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 133, 193
EarI CTCTTC 2 cut(s) 133, 193
Eco24I GRGCYC 2 cut(s) 585, 661
Eco47I GGWCC 1 cut(s) 618
Eco88I CYCGRG 2 cut(s) 18, 309
EcoO109I RGGNCCY 1 cut(s) 618
EcoRII CCWGG 3 cut(s) 294, 577, 621
EcoT38I GRGCYC 2 cut(s) 585, 661
FaeI CATG 3 cut(s) 397, 415, 698
FaiI YATR 9 cut(s) 91, 105, 302, 395, 413, 464, 642, 685, 696
FaqI GGGAC 2 cut(s) 188, 604
FatI CATG 3 cut(s) 393, 411, 694
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 4 cut(s) 55, 58, 97, 100
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 2 cut(s) 585, 661
Fsp4HI GCNGC 4 cut(s) 55, 58, 97, 100
FspBI CTAG 3 cut(s) 548, 560, 718
GluI GCNGC 4 cut(s) 55, 58, 97, 100
HaeIII GGCC 4 cut(s) 102, 316, 577, 599
Hin1II CATG 3 cut(s) 397, 415, 698
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 6 cut(s) 10, 201, 307, 354, 415, 544
HphI GGTGA 4 cut(s) 61, 343, 416, 455
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 5 cut(s) 9, 186, 240, 347, 513
Hpy188III TCNNGA 3 cut(s) 18, 20, 233
Hpy8I GTNNAC 1 cut(s) 432
Hpy99I CGWCG 4 cut(s) 343, 376, 433, 491
HpyCH4III ACNGT 3 cut(s) 494, 520, 610
HpyCH4IV ACGT 1 cut(s) 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 267, 563, 656
HpyF3I CTNAG 1 cut(s) 569
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 3 cut(s) 397, 415, 698
KflI GGGWCCC 1 cut(s) 618
Kzo9I GATC 5 cut(s) 181, 186, 235, 342, 388
LmnI GCTCC 1 cut(s) 664
LweI GCATC 1 cut(s) 324
MaeI CTAG 3 cut(s) 548, 560, 718
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 183, 188, 237, 344, 390
MbiI CCGCTC 1 cut(s) 54
MboI GATC 5 cut(s) 181, 186, 235, 342, 388
MboII GAAGA 3 cut(s) 120, 210, 349
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 2 cut(s) 186, 388
MhlI GDGCHC 2 cut(s) 585, 661
MluCI AATT 3 cut(s) 207, 320, 699
MlyI GAGTC 5 cut(s) 4, 210, 301, 363, 409
MnlI CCTC 9 cut(s) 16, 50, 131, 134, 281, 305, 430, 507, 597
MspR9I CCNGG 3 cut(s) 296, 579, 623
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 3 cut(s) 296, 579, 623
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 267, 563, 656
NdeII GATC 5 cut(s) 181, 186, 235, 342, 388
NlaIII CATG 3 cut(s) 397, 415, 698
NlaIV GGNNCC 3 cut(s) 619, 620, 660
NmuCI GTSAC 1 cut(s) 443
NruI TCGCGA 1 cut(s) 234
PaeR7I CTCGAG 2 cut(s) 18, 309
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 4 cut(s) 56, 59, 98, 101
PleI GAGTC 5 cut(s) 4, 209, 301, 362, 409
PpsI GAGTC 5 cut(s) 4, 209, 301, 362, 409
PpuMI RGGWCCY 1 cut(s) 618
PshAI GACNNNNGTC 2 cut(s) 30, 437
Psp5II RGGWCCY 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 294, 577, 621
PspGI CCWGG 3 cut(s) 294, 577, 621
PspN4I GGNNCC 3 cut(s) 619, 620, 660
PspPI GGNCC 4 cut(s) 314, 575, 597, 618
PspPPI RGGWCCY 1 cut(s) 618
PspXI VCTCGAGB 1 cut(s) 309
PsuI RGATCY 2 cut(s) 186, 388
RruI TCGCGA 1 cut(s) 234
SalI GTCGAC 1 cut(s) 430
SatI GCNGC 4 cut(s) 55, 58, 97, 100
Sau3AI GATC 5 cut(s) 181, 186, 235, 342, 388
Sau96I GGNCC 4 cut(s) 314, 575, 597, 618
SchI GAGTC 5 cut(s) 4, 210, 301, 363, 409
ScrFI CCNGG 3 cut(s) 296, 579, 623
SduI GDGCHC 2 cut(s) 585, 661
SetI ASST 4 cut(s) 112, 300, 441, 450
SfaNI GCATC 1 cut(s) 324
Sfr274I CTCGAG 2 cut(s) 18, 309
SinI GGWCC 1 cut(s) 618
SlaI CTCGAG 2 cut(s) 18, 309
SmlI CTYRAG 3 cut(s) 18, 309, 601
SmoI CTYRAG 3 cut(s) 18, 309, 601
Sse9I AATT 3 cut(s) 207, 320, 699
SsiI CCGC 6 cut(s) 54, 57, 96, 99, 456, 501
SspMI CTAG 3 cut(s) 548, 560, 718
StyD4I CCNGG 3 cut(s) 294, 577, 621
TaaI ACNGT 3 cut(s) 494, 520, 610
TaiI ACGT 1 cut(s) 450
TaqI TCGA 6 cut(s) 19, 180, 273, 310, 399, 431
TasI AATT 3 cut(s) 207, 320, 699
TauI GCSGC 4 cut(s) 57, 60, 99, 102
TfiI GAWTC 1 cut(s) 544
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 4 cut(s) 62, 78, 104, 603
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 618
XapI RAATTY 1 cut(s) 320
XhoI CTCGAG 2 cut(s) 18, 309
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 3 cut(s) 548, 560, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.