Rmu_sc0001068.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001068.1
OG0000220
Physical Location & Seq
Reverse (-)
82136 .. 82903
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001068.1_g000021.1.cds

Sequence Viewer

Length: 768 bp
atgtttataaaactatacaaagggccccaaattgatcaggaccccaaagttgatctccagtggcaaacagaggtgatagcatggataaagagaaaagattctattaagcaagaaaaggcagctgttcaagatgatattagagaagaacttcgcaatgattatcttggcaatcaaacaagtctgtacaatgacgatgacgacaatgatgatgatgatgatgatgatgatggatttcagtatccaccagacatgcaccctgtagaacgacaagattatcgtgctgcagtaagaagatcaaccgtagatcgtgataagaactctcagtttagtagaagtgcaagacttcaatttccaaaacaatcgagaggcggtagtagcagtcaacaaccgcaacaagttgatcgatcaaaaacctatcggtactcatttcctgagcctccagtagcaatgtcatcaaaagatagtcgatcaaaacgaagcacaattaaatcattactaaaaggtcgtagagaactattggcaacaatggtgtccaaataccacatatatgatgctgtcccttttaacaaagttgattttccacattttcaaaacatgttgactacagctggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctgtgaaggtaattttggtcatgccacccaagatgaagaccacggagtgagaacacctggtcatggtgctcaagagaagacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

255

Amino Acids

29.06

Weight (kDa)

5.57

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AciI CCGC 3 cut(s) 369, 389, 615
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 2 cut(s) 185, 422
AfiI CCNNNNNNNGG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 3 cut(s) 128, 347, 590
AjnI CCWGG 1 cut(s) 739
AjuI GAANNNNNNNTTGG 2 cut(s) 681, 713
AluBI AGCT 2 cut(s) 122, 608
AluI AGCT 2 cut(s) 122, 608
Alw21I GWGCWC 1 cut(s) 754
AoxI GGCC 1 cut(s) 23
ApaI GGGCCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 119, 281
Asp700I GAANNNNTTC 2 cut(s) 97, 147
AspS9I GGNCC 3 cut(s) 23, 24, 40
AsuHPI GGTGA 2 cut(s) 85, 644
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 2 cut(s) 131, 268
BccI CCATC 2 cut(s) 221, 659
BciT130I CCWGG 1 cut(s) 741
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 34
BfmI CTRYAG 3 cut(s) 258, 282, 603
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 2 cut(s) 120, 282
BlsI GCNGC 2 cut(s) 121, 283
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 23, 24, 40
BmiI GGNNCC 3 cut(s) 25, 26, 42
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 2 cut(s) 41, 423
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 724
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse1I ACTGG 2 cut(s) 58, 440
Bse3DI GCAATG 2 cut(s) 160, 453
BseBI CCWGG 1 cut(s) 741
BseCI ATCGAT 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 1 cut(s) 670
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMI GCAATG 2 cut(s) 160, 453
BseMII CTCAG 2 cut(s) 335, 423
BseNI ACTGG 2 cut(s) 58, 440
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 2 cut(s) 131, 268
BshFI GGCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 754
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 1 cut(s) 25
Bsp120I GGGCCC 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 27, 754
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
BspACI CCGC 3 cut(s) 369, 389, 615
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 334, 424
BspDI ATCGAT 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 25, 26, 42
BspMAI CTGCAG 1 cut(s) 286
BsrDI GCAATG 2 cut(s) 160, 453
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 2 cut(s) 58, 440
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 1 cut(s) 301
BstAUI TGTACA 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 321, 432
BstDSI CCRYGG 1 cut(s) 724
BstF5I GGATG 1 cut(s) 670
BstKTI GATC 7 cut(s) 37, 55, 296, 307, 403, 407, 470
BstMBI GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 2 cut(s) 253, 598
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 3 cut(s) 258, 282, 603
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 131, 268
BstV2I GAAGAC 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 403
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 403
BtgI CCRYGG 1 cut(s) 724
BtsCI GGATG 1 cut(s) 670
BtsIMutI CAGTG 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 23, 24, 40
ClaI ATCGAT 1 cut(s) 403
CsiI ACCWGGT 1 cut(s) 739
Csp6I GTAC 2 cut(s) 184, 421
CviAII CATG 5 cut(s) 81, 250, 595, 704, 746
CviJI RGCY 4 cut(s) 25, 122, 436, 608
CviKI_1 RGCY 4 cut(s) 25, 122, 436, 608
CviQI GTAC 2 cut(s) 184, 421
DdeI CTNAG 2 cut(s) 321, 432
DpnI GATC 7 cut(s) 36, 54, 295, 306, 402, 406, 469
DpnII GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
DraIII CACNNNGTG 1 cut(s) 730
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 40
EcoO109I RGGNCCY 3 cut(s) 23, 24, 40
EcoRII CCWGG 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 5 cut(s) 84, 253, 598, 707, 749
FaqI GGGAC 1 cut(s) 542
FatI CATG 5 cut(s) 80, 249, 594, 703, 745
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 120, 282
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 120, 282
GluI GCNGC 2 cut(s) 120, 282
GsuI CTGGAG 2 cut(s) 41, 423
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 5 cut(s) 84, 253, 598, 707, 749
HincII GTYRAC 2 cut(s) 383, 600
HindII GTYRAC 2 cut(s) 383, 600
HinfI GANTC 2 cut(s) 98, 672
HphI GGTGA 2 cut(s) 85, 644
Hpy166II GTNNAC 2 cut(s) 383, 600
Hpy188III TCNNGA 6 cut(s) 38, 128, 308, 363, 431, 755
Hpy8I GTNNAC 2 cut(s) 383, 600
HpyAV CCTTC 1 cut(s) 683
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 253, 284, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 2 cut(s) 321, 432
Hsp92II CATG 5 cut(s) 84, 253, 598, 707, 749
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
Lsp1109I GCAGC 2 cut(s) 131, 268
LweI GCATC 1 cut(s) 541
MabI ACCWGGT 1 cut(s) 739
MalI GATC 7 cut(s) 36, 54, 295, 306, 402, 406, 469
MboI GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
MboII GAAGA 4 cut(s) 155, 303, 648, 731
MhlI GDGCHC 2 cut(s) 27, 754
MluCI AATT 5 cut(s) 30, 347, 483, 677, 694
MnlI CCTC 5 cut(s) 64, 359, 447, 623, 662
MroXI GAANNNNTTC 2 cut(s) 97, 147
MseI TTAA 3 cut(s) 105, 486, 564
MslI CAYNNNNRTG 1 cut(s) 546
MspA1I CMGCKG 2 cut(s) 122, 608
MspR9I CCNGG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 741
MwoI GCNNNNNNNGC 1 cut(s) 375
NdeII GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
NlaIII CATG 5 cut(s) 84, 253, 598, 707, 749
NlaIV GGNNCC 3 cut(s) 25, 26, 42
NspI RCATGY 2 cut(s) 253, 598
PciI ACATGT 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PdmI GAANNNNTTC 2 cut(s) 97, 147
PfeI GAWTC 2 cut(s) 98, 672
PkrI GCNGC 2 cut(s) 121, 283
PpuMI RGGWCCY 1 cut(s) 40
PscI ACATGT 1 cut(s) 594
PsiI TTATAA 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 3 cut(s) 25, 26, 42
PspOMI GGGCCC 1 cut(s) 23
PspPI GGNCC 3 cut(s) 23, 24, 40
PspPPI RGGWCCY 1 cut(s) 40
PstI CTGCAG 1 cut(s) 286
PvuII CAGCTG 2 cut(s) 122, 608
RsaI GTAC 2 cut(s) 185, 422
RsaNI GTAC 2 cut(s) 184, 421
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 3 cut(s) 105, 486, 564
SatI GCNGC 2 cut(s) 120, 282
Sau3AI GATC 7 cut(s) 34, 52, 293, 304, 400, 404, 467
Sau96I GGNCC 3 cut(s) 23, 24, 40
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 2 cut(s) 27, 754
SexAI ACCWGGT 1 cut(s) 739
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 3 cut(s) 258, 282, 603
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 1 cut(s) 753
SmoI CTYRAG 1 cut(s) 753
Sse9I AATT 5 cut(s) 30, 347, 483, 677, 694
SsiI CCGC 3 cut(s) 369, 389, 615
StyD4I CCNGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 362, 403, 466
TasI AATT 5 cut(s) 30, 347, 483, 677, 694
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 98, 672
Tru1I TTAA 3 cut(s) 105, 486, 564
Tru9I TTAA 3 cut(s) 105, 486, 564
TscAI CASTG 1 cut(s) 65
TseI GCWGC 2 cut(s) 119, 281
TspDTI ATGAA 2 cut(s) 657, 732
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 40
XceI RCATGY 2 cut(s) 253, 598
XmnI GAANNNNTTC 2 cut(s) 97, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.