Rmu_sc0007941.1_g000003
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007941.1
Physical Location & Seq
Forward (+)
20517 .. 22934
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007941.1_g000003.1.cds

Sequence Viewer

Length: 561 bp
atgtctatgaacagaattctagtagtgctacttcatgttgcaagcgagccgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagtgagagtcttatatgaagaagttgttaaaaacccagaagataattcagatagtcatgatgcgtggggtggtacaacaactccagatagttctgatgatgctggagagggtggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatggaggattacaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacagattacagtcaaatccatggcgacccaaggtcaagtcatcacctacaaagcggcggtggcctgggaacgtacccaacaagcctttggttatcgaagacgtccaggtggctccgccgcaggccggagaggttcgcgtcaagattatctacaccgctctctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

186

Amino Acids

20.16

Weight (kDa)

4.65

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccBSI CCGCTC 1 cut(s) 551
AccII CGCG 1 cut(s) 531
AciI CCGC 7 cut(s) 50, 285, 448, 451, 509, 512, 549
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 2 cut(s) 241, 468
AfiI CCNNNNNNNGG 1 cut(s) 518
AhdI GACNNNNNGTC 1 cut(s) 425
AjnI CCWGG 2 cut(s) 457, 498
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 1 cut(s) 62
AoxI GGCC 2 cut(s) 455, 516
ApoI RAATTY 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 314, 429
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbsI GAAGAC 3 cut(s) 124, 396, 498
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 2 cut(s) 459, 500
BclI TGATCA 1 cut(s) 370
BfaI CTAG 1 cut(s) 20
BisI GCNGC 3 cut(s) 50, 449, 512
BlsI GCNGC 3 cut(s) 51, 450, 513
Bme1390I CCNGG 2 cut(s) 459, 500
BmeRI GACNNNNNGTC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 2 cut(s) 459, 500
BmsI GCATC 2 cut(s) 217, 256
BpiI GAAGAC 3 cut(s) 124, 396, 498
BpmI CTGGAG 2 cut(s) 234, 291
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 413, 423, 458
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 518
BseBI CCWGG 2 cut(s) 459, 500
BseDI CCNNGG 3 cut(s) 413, 423, 458
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 518
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 457, 518
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 518
BsnI GGCC 2 cut(s) 457, 518
Bsp143I GATC 2 cut(s) 67, 370
Bsp19I CCATGG 1 cut(s) 413
BspACI CCGC 7 cut(s) 50, 285, 448, 451, 509, 512, 549
BspANI GGCC 2 cut(s) 457, 518
BspFNI CGCG 1 cut(s) 531
BspHI TCATGA 2 cut(s) 76, 223
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 551
BssECI CCNNGG 3 cut(s) 413, 423, 458
BssMI GATC 2 cut(s) 67, 370
BssNI GRCGYC 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 413, 423
Bst2UI CCWGG 2 cut(s) 459, 500
Bst4CI ACNGT 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 495
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 4 cut(s) 43, 47, 93, 516
BstDSI CCRYGG 1 cut(s) 413
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 531
BstKTI GATC 2 cut(s) 70, 373
BstMBI GATC 2 cut(s) 67, 370
BstMWI GCNNNNNNNGC 2 cut(s) 152, 454
BstNI CCWGG 2 cut(s) 459, 500
BstSCI CCNGG 2 cut(s) 457, 498
BstUI CGCG 1 cut(s) 531
BstV2I GAAGAC 3 cut(s) 124, 396, 498
BsuRI GGCC 2 cut(s) 457, 518
BtgI CCRYGG 1 cut(s) 413
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 4 cut(s) 43, 47, 93, 516
CciI TCATGA 2 cut(s) 76, 223
CseI GACGC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 240, 467
CviAII CATG 5 cut(s) 35, 77, 224, 374, 414
CviJI RGCY 6 cut(s) 49, 113, 457, 478, 506, 518
CviKI_1 RGCY 6 cut(s) 49, 113, 457, 478, 506, 518
CviQI GTAC 2 cut(s) 240, 467
DpnI GATC 2 cut(s) 69, 372
DpnII GATC 2 cut(s) 67, 370
DriI GACNNNNNGTC 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 129
Eam1105I GACNNNNNGTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 498
Eco130I CCWWGG 2 cut(s) 413, 423
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 457, 498
EcoT14I CCWWGG 2 cut(s) 413, 423
ErhI CCWWGG 2 cut(s) 413, 423
FaeI CATG 5 cut(s) 38, 80, 227, 377, 417
FatI CATG 5 cut(s) 34, 76, 223, 373, 413
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 50, 449, 512
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 3 cut(s) 50, 449, 512
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 50, 449, 512
GsuI CTGGAG 2 cut(s) 234, 291
HaeIII GGCC 2 cut(s) 457, 518
HapII CCGG 1 cut(s) 519
HgaI GACGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 5 cut(s) 38, 80, 227, 377, 417
HinfI GANTC 2 cut(s) 159, 174
HpaII CCGG 1 cut(s) 519
HphI GGTGA 2 cut(s) 314, 429
Hpy188I TCNGA 2 cut(s) 217, 262
Hpy188III TCNNGA 5 cut(s) 77, 224, 251, 535, 558
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 3 cut(s) 165, 465, 495
HpyCH4V TGCA 3 cut(s) 41, 95, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 454
HpySE526I ACGT 3 cut(s) 165, 465, 495
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 5 cut(s) 38, 80, 227, 377, 417
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 67, 370
LmnI GCTCC 1 cut(s) 511
LweI GCATC 2 cut(s) 217, 256
MaeI CTAG 1 cut(s) 20
MaeII ACGT 3 cut(s) 165, 465, 495
MalI GATC 2 cut(s) 69, 372
MbiI CCGCTC 1 cut(s) 551
MboI GATC 2 cut(s) 67, 370
MboII GAAGA 7 cut(s) 116, 129, 197, 218, 318, 401, 503
MluCI AATT 4 cut(s) 15, 211, 347, 364
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 6 cut(s) 110, 132, 268, 293, 332, 517
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 2 cut(s) 459, 500
MvaI CCWGG 2 cut(s) 459, 500
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 152, 454
NcoI CCATGG 1 cut(s) 413
NdeII GATC 2 cut(s) 67, 370
NlaIII CATG 5 cut(s) 38, 80, 227, 377, 417
NlaIV GGNNCC 1 cut(s) 507
PagI TCATGA 2 cut(s) 76, 223
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 3 cut(s) 51, 450, 513
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp6I CCWGG 2 cut(s) 457, 498
PspGI CCWGG 2 cut(s) 457, 498
PspN4I GGNNCC 1 cut(s) 507
RsaI GTAC 2 cut(s) 241, 468
RsaNI GTAC 2 cut(s) 240, 467
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 50, 449, 512
Sau3AI GATC 2 cut(s) 67, 370
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 459, 500
SfaNI GCATC 2 cut(s) 217, 256
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 4 cut(s) 15, 211, 347, 364
SsiI CCGC 7 cut(s) 50, 285, 448, 451, 509, 512, 549
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 457, 498
StyI CCWWGG 2 cut(s) 413, 423
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 3 cut(s) 168, 468, 498
TaqI TCGA 2 cut(s) 102, 489
TasI AATT 4 cut(s) 15, 211, 347, 364
TauI GCSGC 3 cut(s) 52, 451, 514
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TspDTI ATGAA 7 cut(s) 23, 23, 65, 123, 198, 327, 402
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 2 cut(s) 78, 478
XspI CTAG 1 cut(s) 20
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.