Rmu_sc0004657.1_g000054

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004657.1
Physical Location & Seq
Reverse (-)
254878 .. 255288
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004657.1_g000054.1.cds

Sequence Viewer

Length: 411 bp
atggcaagttctgaccctgtggggagcaaaaaagacccaacttggaattatgcttttccatatcaaggccaaactaaaggtacagtatgcaagttttgtaatacggtcataaagagtggtggtatcactcgatttaagttccacttgactggattagatcctaccaagaatacacgagtttgtgataaggtgccaccagaagttcaaaaattagtaaaagaatggatgaggagaaaatatactgcaaaatatcaaaaggattcaataatccgtgatactcgagaagaattgcgatcagggttatcacaacaattgaactctgaagatgaagatgaaggttttataggtcagcatgatgtagatccccgtgattataaagctgctatgagagcatcaagacaatcagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.6

Weight (kDa)

9.13

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 190
AclWI GGATC 2 cut(s) 152, 356
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 3 cut(s) 206, 264, 316
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
AlwI GGATC 2 cut(s) 152, 356
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 279
BanI GGYRCC 1 cut(s) 190
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 1 cut(s) 367
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 360
BseGI GGATG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 279
Bsp143I GATC 3 cut(s) 157, 293, 361
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 2 cut(s) 152, 356
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 154
BssMI GATC 3 cut(s) 157, 293, 361
BssSI CACGAG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 85, 106
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 3 cut(s) 160, 296, 364
BstMBI GATC 3 cut(s) 157, 293, 361
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 2 cut(s) 157, 361
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 2 cut(s) 157, 361
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 231
Csp6I GTAC 1 cut(s) 81
CviAII CATG 1 cut(s) 353
CviJI RGCY 2 cut(s) 69, 380
CviKI_1 RGCY 2 cut(s) 69, 380
CviQI GTAC 1 cut(s) 81
DpnI GATC 3 cut(s) 159, 295, 363
DpnII GATC 3 cut(s) 157, 293, 361
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 279
FaeI CATG 1 cut(s) 356
FaiI YATR 9 cut(s) 51, 61, 88, 110, 240, 344, 354, 375, 386
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 1 cut(s) 356
HinfI GANTC 1 cut(s) 260
Hpy188I TCNGA 3 cut(s) 13, 322, 406
Hpy188III TCNNGA 2 cut(s) 281, 396
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 85, 106
HpyCH4V TGCA 2 cut(s) 90, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 356
Kzo9I GATC 3 cut(s) 157, 293, 361
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 30, 135, 210, 282
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 401
MalI GATC 3 cut(s) 159, 295, 363
MboI GATC 3 cut(s) 157, 293, 361
MboII GAAGA 3 cut(s) 296, 335, 341
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 2 cut(s) 157, 361
MluCI AATT 4 cut(s) 46, 209, 287, 311
MnlI CCTC 1 cut(s) 222
MseI TTAA 1 cut(s) 135
MunI CAATTG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 3 cut(s) 157, 293, 361
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 279
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 382
PsiI TTATAA 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 2 cut(s) 157, 361
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 3 cut(s) 157, 293, 361
SetI ASST 5 cut(s) 82, 192, 340, 349, 382
SfaNI GCATC 1 cut(s) 401
Sfr274I CTCGAG 1 cut(s) 279
SlaI CTCGAG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 4 cut(s) 46, 209, 287, 311
TaaI ACNGT 2 cut(s) 85, 106
TaqI TCGA 2 cut(s) 130, 280
TasI AATT 4 cut(s) 46, 209, 287, 311
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 342, 348
TspGWI ACGGA 1 cut(s) 260
XhoI CTCGAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.