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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 121 |
| AccB1I | GGYRCC | 3 cut(s) | 90, 121, 337 |
| AccII | CGCG | 1 cut(s) | 454 |
| AciI | CCGC | 8 cut(s) | 8, 88, 194, 218, 296, 308, 454, 529 |
| AclWI | GGATC | 2 cut(s) | 160, 237 |
| AcsI | RAATTY | 1 cut(s) | 550 |
| AcyI | GRCGYC | 2 cut(s) | 91, 338 |
| AfaI | GTAC | 2 cut(s) | 123, 586 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 13, 176, 249, 470 |
| AgeI | ACCGGT | 2 cut(s) | 124, 169 |
| AgsI | TTSAA | 3 cut(s) | 62, 323, 334 |
| AjnI | CCWGG | 1 cut(s) | 469 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 303, 335 |
| AluBI | AGCT | 2 cut(s) | 112, 404 |
| AluI | AGCT | 2 cut(s) | 112, 404 |
| Alw26I | GTCTC | 2 cut(s) | 567, 602 |
| AlwI | GGATC | 2 cut(s) | 160, 237 |
| Ama87I | CYCGRG | 1 cut(s) | 433 |
| AoxI | GGCC | 4 cut(s) | 354, 382, 456, 482 |
| ApaI | GGGCCC | 1 cut(s) | 386 |
| ApeKI | GCWGC | 1 cut(s) | 401 |
| ApoI | RAATTY | 1 cut(s) | 550 |
| AsiGI | ACCGGT | 2 cut(s) | 124, 169 |
| Asp718I | GGTACC | 1 cut(s) | 121 |
| AspLEI | GCGC | 3 cut(s) | 93, 242, 340 |
| AspS9I | GGNCC | 5 cut(s) | 382, 383, 456, 483, 611 |
| AsuC2I | CCSGG | 1 cut(s) | 386 |
| AsuHPI | GGTGA | 3 cut(s) | 62, 232, 310 |
| AsuII | TTCGAA | 1 cut(s) | 556 |
| AvaI | CYCGRG | 1 cut(s) | 433 |
| AvaII | GGWCC | 1 cut(s) | 611 |
| BaeGI | GKGCMC | 1 cut(s) | 386 |
| BanI | GGYRCC | 3 cut(s) | 90, 121, 337 |
| BanII | GRGCYC | 2 cut(s) | 386, 434 |
| BauI | CACGAG | 1 cut(s) | 629 |
| BbvCI | CCTCAGC | 1 cut(s) | 405 |
| BbvI | GCAGC | 1 cut(s) | 413 |
| BccI | CCATC | 3 cut(s) | 19, 601, 633 |
| BceAI | ACGGC | 1 cut(s) | 101 |
| BciT130I | CCWGG | 1 cut(s) | 471 |
| BcnI | CCSGG | 1 cut(s) | 386 |
| BcoDI | GTCTC | 2 cut(s) | 567, 602 |
| BfaI | CTAG | 2 cut(s) | 441, 513 |
| BfoI | RGCGCY | 3 cut(s) | 94, 243, 341 |
| BisI | GCNGC | 2 cut(s) | 89, 402 |
| BlsI | GCNGC | 2 cut(s) | 90, 403 |
| Bme1390I | CCNGG | 2 cut(s) | 386, 471 |
| Bme18I | GGWCC | 1 cut(s) | 611 |
| BmeT110I | CYCGRG | 1 cut(s) | 433 |
| BmgT120I | GGNCC | 5 cut(s) | 382, 383, 456, 483, 611 |
| BmiI | GGNNCC | 8 cut(s) | 69, 92, 102, 123, 339, 384, 612, 618 |
| BmrFI | CCNGG | 2 cut(s) | 386, 471 |
| BmsI | GCATC | 2 cut(s) | 243, 269 |
| BpmI | CTGGAG | 2 cut(s) | 119, 453 |
| Bpu10I | CCTNAGC | 1 cut(s) | 405 |
| Bpu14I | TTCGAA | 1 cut(s) | 556 |
| BpuMI | CCSGG | 1 cut(s) | 386 |
| BsaHI | GRCGYC | 2 cut(s) | 91, 338 |
| BsaJI | CCNNGG | 1 cut(s) | 470 |
| BsaWI | WCCGGW | 2 cut(s) | 124, 169 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 303, 333 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 13, 176, 249, 470 |
| Bse118I | RCCGGY | 4 cut(s) | 10, 70, 124, 169 |
| BseBI | CCWGG | 1 cut(s) | 471 |
| BseDI | CCNNGG | 1 cut(s) | 470 |
| BseGI | GGATG | 2 cut(s) | 30, 258 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 13, 176, 249, 470 |
| BseMII | CTCAG | 1 cut(s) | 396 |
| BseRI | GAGGAG | 1 cut(s) | 68 |
| BseSI | GKGCMC | 1 cut(s) | 386 |
| BseXI | GCAGC | 1 cut(s) | 413 |
| Bsh1236I | CGCG | 1 cut(s) | 454 |
| BshFI | GGCC | 4 cut(s) | 356, 384, 458, 484 |
| BshNI | GGYRCC | 3 cut(s) | 90, 121, 337 |
| BshTI | ACCGGT | 2 cut(s) | 124, 169 |
| BsiHKCI | CYCGRG | 1 cut(s) | 433 |
| BsiSI | CCGG | 6 cut(s) | 11, 71, 125, 170, 386, 614 |
| BslFI | GGGAC | 3 cut(s) | 463, 484, 487 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 13, 176, 249, 470 |
| BsmAI | GTCTC | 2 cut(s) | 567, 602 |
| BsmBI | CGTCTC | 1 cut(s) | 602 |
| BsmFI | GGGAC | 3 cut(s) | 463, 484, 487 |
| BsnI | GGCC | 4 cut(s) | 356, 384, 458, 484 |
| BsoBI | CYCGRG | 1 cut(s) | 433 |
| Bsp119I | TTCGAA | 1 cut(s) | 556 |
| Bsp120I | GGGCCC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 2 cut(s) | 386, 434 |
| Bsp143I | GATC | 3 cut(s) | 3, 152, 229 |
| BspACI | CCGC | 8 cut(s) | 8, 88, 194, 218, 296, 308, 454, 529 |
| BspANI | GGCC | 4 cut(s) | 356, 384, 458, 484 |
| BspCNI | CTCAG | 1 cut(s) | 397 |
| BspFNI | CGCG | 1 cut(s) | 454 |
| BspLI | GGNNCC | 8 cut(s) | 69, 92, 102, 123, 339, 384, 612, 618 |
| BspPI | GGATC | 2 cut(s) | 160, 237 |
| BspT104I | TTCGAA | 1 cut(s) | 556 |
| BspT107I | GGYRCC | 3 cut(s) | 90, 121, 337 |
| BsrFI | RCCGGY | 4 cut(s) | 10, 70, 124, 169 |
| BssAI | RCCGGY | 4 cut(s) | 10, 70, 124, 169 |
| BssECI | CCNNGG | 1 cut(s) | 470 |
| BssMI | GATC | 3 cut(s) | 3, 152, 229 |
| BssNI | GRCGYC | 2 cut(s) | 91, 338 |
| BssSI | CACGAG | 1 cut(s) | 629 |
| Bst2BI | CACGAG | 1 cut(s) | 629 |
| Bst2UI | CCWGG | 1 cut(s) | 471 |
| Bst6I | CTCTTC | 1 cut(s) | 566 |
| BstACI | GRCGYC | 2 cut(s) | 91, 338 |
| BstBI | TTCGAA | 1 cut(s) | 556 |
| BstC8I | GCNNGC | 3 cut(s) | 95, 258, 456 |
| BstDEI | CTNAG | 3 cut(s) | 113, 396, 405 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 468 |
| BstF5I | GGATG | 2 cut(s) | 30, 258 |
| BstFNI | CGCG | 1 cut(s) | 454 |
| BstH2I | RGCGCY | 3 cut(s) | 94, 243, 341 |
| BstHHI | GCGC | 3 cut(s) | 93, 242, 340 |
| BstKTI | GATC | 3 cut(s) | 6, 155, 232 |
| BstMAI | GTCTC | 2 cut(s) | 567, 602 |
| BstMBI | GATC | 3 cut(s) | 3, 152, 229 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 94, 109, 464 |
| BstNI | CCWGG | 1 cut(s) | 471 |
| BstSCI | CCNGG | 2 cut(s) | 384, 469 |
| BstSLI | GKGCMC | 1 cut(s) | 386 |
| BstUI | CGCG | 1 cut(s) | 454 |
| BstV1I | GCAGC | 1 cut(s) | 413 |
| BstX2I | RGATCY | 1 cut(s) | 229 |
| BstYI | RGATCY | 1 cut(s) | 229 |
| BsuRI | GGCC | 4 cut(s) | 356, 384, 458, 484 |
| BtsCI | GGATG | 2 cut(s) | 30, 258 |
| Cac8I | GCNNGC | 3 cut(s) | 95, 258, 456 |
| CfoI | GCGC | 3 cut(s) | 93, 242, 340 |
| Cfr10I | RCCGGY | 4 cut(s) | 10, 70, 124, 169 |
| Cfr13I | GGNCC | 5 cut(s) | 382, 383, 456, 483, 611 |
| CseI | GACGC | 1 cut(s) | 460 |
| Csp6I | GTAC | 2 cut(s) | 122, 585 |
| CspAI | ACCGGT | 2 cut(s) | 124, 169 |
| CviQI | GTAC | 2 cut(s) | 122, 585 |
| DdeI | CTNAG | 3 cut(s) | 113, 396, 405 |
| DinI | GGCGCC | 2 cut(s) | 92, 339 |
| DpnI | GATC | 3 cut(s) | 5, 154, 231 |
| DpnII | GATC | 3 cut(s) | 3, 152, 229 |
| Eam1104I | CTCTTC | 1 cut(s) | 566 |
| EarI | CTCTTC | 1 cut(s) | 566 |
| Eco24I | GRGCYC | 2 cut(s) | 386, 434 |
| Eco47I | GGWCC | 1 cut(s) | 611 |
| Eco88I | CYCGRG | 1 cut(s) | 433 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 468 |
| EcoRII | CCWGG | 1 cut(s) | 469 |
| EcoT38I | GRGCYC | 2 cut(s) | 386, 434 |
| EgeI | GGCGCC | 2 cut(s) | 92, 339 |
| EheI | GGCGCC | 2 cut(s) | 92, 339 |
| Esp3I | CGTCTC | 1 cut(s) | 602 |
| FaiI | YATR | 1 cut(s) | 161 |
| FaqI | GGGAC | 3 cut(s) | 463, 484, 487 |
| FauI | CCCGC | 3 cut(s) | 15, 301, 447 |
| Fnu4HI | GCNGC | 2 cut(s) | 89, 402 |
| FokI | GGATG | 2 cut(s) | 37, 265 |
| FriOI | GRGCYC | 2 cut(s) | 386, 434 |
| Fsp4HI | GCNGC | 2 cut(s) | 89, 402 |
| FspBI | CTAG | 2 cut(s) | 441, 513 |
| GlaI | GCGC | 3 cut(s) | 92, 241, 339 |
| GluI | GCNGC | 2 cut(s) | 89, 402 |
| GsuI | CTGGAG | 2 cut(s) | 119, 453 |
| HaeII | RGCGCY | 3 cut(s) | 94, 243, 341 |
| HaeIII | GGCC | 4 cut(s) | 356, 384, 458, 484 |
| HapII | CCGG | 6 cut(s) | 11, 71, 125, 170, 386, 614 |
| HgaI | GACGC | 1 cut(s) | 460 |
| HhaI | GCGC | 3 cut(s) | 93, 242, 340 |
| Hin1I | GRCGYC | 2 cut(s) | 91, 338 |
| Hin6I | GCGC | 3 cut(s) | 91, 240, 338 |
| HinP1I | GCGC | 3 cut(s) | 91, 240, 338 |
| HindIII | AAGCTT | 1 cut(s) | 110 |
| HpaII | CCGG | 6 cut(s) | 11, 71, 125, 170, 386, 614 |
| HphI | GGTGA | 3 cut(s) | 62, 232, 310 |
| Hpy188I | TCNGA | 2 cut(s) | 267, 621 |
| Hpy188III | TCNNGA | 6 cut(s) | 140, 233, 281, 419, 579, 629 |
| Hpy99I | CGWCG | 1 cut(s) | 87 |
| HpyAV | CCTTC | 2 cut(s) | 328, 375 |
| HpyCH4IV | ACGT | 2 cut(s) | 583, 595 |
| HpyCH4V | TGCA | 1 cut(s) | 260 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 94, 109, 464 |
| HpyF3I | CTNAG | 3 cut(s) | 113, 396, 405 |
| HpySE526I | ACGT | 2 cut(s) | 583, 595 |
| Hsp92I | GRCGYC | 2 cut(s) | 91, 338 |
| HspAI | GCGC | 3 cut(s) | 91, 240, 338 |
| KasI | GGCGCC | 2 cut(s) | 90, 337 |
| KpnI | GGTACC | 1 cut(s) | 125 |
| Kzo9I | GATC | 3 cut(s) | 3, 152, 229 |
| LmnI | GCTCC | 4 cut(s) | 67, 100, 472, 622 |
| Lsp1109I | GCAGC | 1 cut(s) | 413 |
| LweI | GCATC | 2 cut(s) | 243, 269 |
| MaeI | CTAG | 2 cut(s) | 441, 513 |
| MaeII | ACGT | 2 cut(s) | 583, 595 |
| MalI | GATC | 3 cut(s) | 5, 154, 231 |
| MboI | GATC | 3 cut(s) | 3, 152, 229 |
| MboII | GAAGA | 2 cut(s) | 434, 583 |
| MfeI | CAATTG | 1 cut(s) | 62 |
| MflI | RGATCY | 1 cut(s) | 229 |
| MhlI | GDGCHC | 2 cut(s) | 386, 434 |
| MluCI | AATT | 4 cut(s) | 62, 174, 276, 550 |
| Mly113I | GGCGCC | 2 cut(s) | 91, 338 |
| MnlI | CCTC | 9 cut(s) | 35, 46, 49, 112, 282, 283, 298, 400, 469 |
| MseI | TTAA | 1 cut(s) | 315 |
| MspA1I | CMGCKG | 1 cut(s) | 404 |
| MspI | CCGG | 6 cut(s) | 11, 71, 125, 170, 386, 614 |
| MspR9I | CCNGG | 2 cut(s) | 386, 471 |
| MunI | CAATTG | 1 cut(s) | 62 |
| MvaI | CCWGG | 1 cut(s) | 471 |
| MvnI | CGCG | 1 cut(s) | 454 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 94, 109, 464 |
| NarI | GGCGCC | 2 cut(s) | 91, 338 |
| NciI | CCSGG | 1 cut(s) | 386 |
| NdeII | GATC | 3 cut(s) | 3, 152, 229 |
| NlaIV | GGNNCC | 8 cut(s) | 69, 92, 102, 123, 339, 384, 612, 618 |
| NspV | TTCGAA | 1 cut(s) | 556 |
| PflFI | GACNNNGTC | 1 cut(s) | 496 |
| PinAI | ACCGGT | 2 cut(s) | 124, 169 |
| PkrI | GCNGC | 2 cut(s) | 90, 403 |
| PluTI | GGCGCC | 2 cut(s) | 94, 341 |
| Psp6I | CCWGG | 1 cut(s) | 469 |
| PspGI | CCWGG | 1 cut(s) | 469 |
| PspN4I | GGNNCC | 8 cut(s) | 69, 92, 102, 123, 339, 384, 612, 618 |
| PspOMI | GGGCCC | 1 cut(s) | 382 |
| PspPI | GGNCC | 5 cut(s) | 382, 383, 456, 483, 611 |
| PsuI | RGATCY | 1 cut(s) | 229 |
| PsyI | GACNNNGTC | 1 cut(s) | 496 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| RsaI | GTAC | 2 cut(s) | 123, 586 |
| RsaNI | GTAC | 2 cut(s) | 122, 585 |
| SaqAI | TTAA | 1 cut(s) | 315 |
| SatI | GCNGC | 2 cut(s) | 89, 402 |
| Sau3AI | GATC | 3 cut(s) | 3, 152, 229 |
| Sau96I | GGNCC | 5 cut(s) | 382, 383, 456, 483, 611 |
| ScrFI | CCNGG | 2 cut(s) | 386, 471 |
| SduI | GDGCHC | 2 cut(s) | 386, 434 |
| SetI | ASST | 8 cut(s) | 60, 114, 123, 321, 406, 411, 586, 598 |
| SfaNI | GCATC | 2 cut(s) | 243, 269 |
| SfoI | GGCGCC | 2 cut(s) | 92, 339 |
| SfuI | TTCGAA | 1 cut(s) | 556 |
| SgrAI | CRCCGGYG | 1 cut(s) | 10 |
| SinI | GGWCC | 1 cut(s) | 611 |
| Sse9I | AATT | 4 cut(s) | 62, 174, 276, 550 |
| SsiI | CCGC | 8 cut(s) | 8, 88, 194, 218, 296, 308, 454, 529 |
| SspDI | GGCGCC | 2 cut(s) | 90, 337 |
| SspMI | CTAG | 2 cut(s) | 441, 513 |
| StyD4I | CCNGG | 2 cut(s) | 384, 469 |
| TaiI | ACGT | 2 cut(s) | 586, 598 |
| TaqI | TCGA | 1 cut(s) | 556 |
| TasI | AATT | 4 cut(s) | 62, 174, 276, 550 |
| TauI | GCSGC | 1 cut(s) | 91 |
| Tru1I | TTAA | 1 cut(s) | 315 |
| Tru9I | TTAA | 1 cut(s) | 315 |
| TseI | GCWGC | 1 cut(s) | 401 |
| TspGWI | ACGGA | 2 cut(s) | 358, 592 |
| Tth111I | GACNNNGTC | 1 cut(s) | 496 |
| VpaK11BI | GGWCC | 1 cut(s) | 611 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 468 |
| XapI | RAATTY | 1 cut(s) | 550 |
| XspI | CTAG | 2 cut(s) | 441, 513 |