RchiOBHm_Chr2g0168971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000220
Physical Location & Seq
Reverse (-)
83274209 .. 83276571
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53660

Sequence Viewer

Length: 1161 bp
ATGTTGTCCAAATACCACATATATGATGCTGTCCCTTTTAACAAAGCTGATTCTTCACATTTCCAAAACATGTTGACTACAGCTGGAAATCTAGGTCCTGGTGTAAAGCTTCCTACCTCCTATGAAATTCAGACTCGTTACTTAGAGAATGAGTACACAGAAATGAAAAGGTGTGTGGATACTCACAGAGAAACCTGGAAAATATATGGATGCACTATCACGTGTGATGGATGGACTGACCCAACCAAAATGTCTATTCTAAATTTCATGGTGTATTCAAAAGGTTCAACTGTGTTTTTGAAGTCTGTAGATGCTTCACATATGAAAAAAAATGCTCAGTACATAGAACTATTGTTAGATGAGATTATCCAAGATGTTGGACCAGAAAATGTTGTCCAGATTGTCACTGACAATGCATCAGCATTTAAAAAGGCCGGAAGGGAACTACAGAAAAAATATCCACTGTTCTGGATCCCGTGTGCTGCCCACTGTATCGATTTGATATTTGAAGATATCGGGAAGAAAGAGACTGTTTCCACTGTCGTCAAATGGGCTCAAAGTGTAACTAACTACATCTACAATCATGGTTGGGTACTGGCTGAAATGAGGAGTATCACGAAGGGAGATTTGATTCGACCGGGTAAAACTCGATTTGCGACAAATCACATTGCCATCGATAGTATTTTGAAGAAGAAATCTGATTTGAGAAAATTGTTTACAAGTAGCGCATGGAATGAGAATGCAGCGAGCATGACCAGAGATGGAAAAAGGATAGAAAAAAGAGTCCTCGATGGGACATTTTGGGATGGCATGGAAGCAGTCCATAAAATTTATAAGCCATTGTATGAGATTCTTCTAATTGTTGACACAAAAATTCAGCCAACCATGCCCATATTATATGATATGTTTGAAAGAGTGAAACAACAAATATCACAGATGAGAGGAAAGAAATGGGTGCTTAAAATCATCAATGATCGATGGGATAACATATTAAGTCAACCATTGCATGCAGCAGCACATTTCTTAAACCCAAATTTTCATTATCGACATGATGTTGGTTACAGCCCACGTTTCACAAACTCTCTGGCAACAGTTGTCGAACAATTTAACATAAATGGAGAAATTGCGAATACATTTGTGGATGACGTAACTTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

386

Amino Acids

44.45

Weight (kDa)

8.7

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 38 - 188 2.8e-52 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 834
AclWI GGATC 2 cut(s) 466, 479
AcsI RAATTY 5 cut(s) 126, 262, 828, 873, 1033
AcvI CACGTG 1 cut(s) 222
AfaI GTAC 3 cut(s) 155, 341, 594
AflIII ACRYGT 2 cut(s) 69, 221
AgsI TTSAA 6 cut(s) 279, 288, 301, 509, 688, 911
AjnI CCWGG 2 cut(s) 97, 194
AluBI AGCT 3 cut(s) 47, 83, 109
AluI AGCT 3 cut(s) 47, 83, 109
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 2 cut(s) 466, 479
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 4 cut(s) 482, 743, 1010, 1013
ApoI RAATTY 5 cut(s) 126, 262, 828, 873, 1033
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 2 cut(s) 95, 380
AsuC2I CCSGG 1 cut(s) 639
AvaII GGWCC 2 cut(s) 95, 380
BamHI GGATCC 1 cut(s) 471
BanII GRGCYC 1 cut(s) 556
BbrPI CACGTG 1 cut(s) 222
BbvI GCAGC 4 cut(s) 469, 755, 1022, 1025
BccI CCATC 7 cut(s) 221, 225, 680, 755, 785, 800, 972
BciT130I CCWGG 2 cut(s) 99, 196
BciVI GTATCC 1 cut(s) 172
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 3 cut(s) 78, 306, 446
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 4 cut(s) 483, 744, 1011, 1014
BlsI GCNGC 4 cut(s) 484, 745, 1012, 1015
Bme1390I CCNGG 3 cut(s) 99, 196, 639
Bme18I GGWCC 2 cut(s) 95, 380
BmgT120I GGNCC 2 cut(s) 95, 380
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 3 cut(s) 99, 196, 639
BmsI GCATC 4 cut(s) 16, 200, 301, 425
BpuMI CCSGG 1 cut(s) 639
Bsa29I ATCGAT 3 cut(s) 495, 675, 976
BsaAI YACGTR 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 2 cut(s) 666, 1001
BseBI CCWGG 2 cut(s) 99, 196
BseCI ATCGAT 3 cut(s) 495, 675, 976
BseGI GGATG 4 cut(s) 215, 236, 811, 1147
BseMI GCAATG 2 cut(s) 666, 1001
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 622
BseXI GCAGC 4 cut(s) 469, 755, 1022, 1025
Bsh1285I CGRYCG 1 cut(s) 638
BshFI GGCC 1 cut(s) 434
BshVI ATCGAT 3 cut(s) 495, 675, 976
BsiEI CGRYCG 1 cut(s) 638
BsiSI CCGG 2 cut(s) 435, 638
BslFI GGGAC 2 cut(s) 17, 808
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 2 cut(s) 17, 808
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 2 cut(s) 471, 973
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 349
BspDI ATCGAT 3 cut(s) 495, 675, 976
BspLI GGNNCC 1 cut(s) 473
BspPI GGATC 2 cut(s) 466, 479
BsrDI GCAATG 2 cut(s) 666, 1001
BsrI ACTGG 1 cut(s) 600
BssMI GATC 2 cut(s) 471, 973
Bst2UI CCWGG 2 cut(s) 99, 196
Bst4CI ACNGT 6 cut(s) 292, 465, 491, 532, 541, 1093
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 748, 1008
BstDEI CTNAG 2 cut(s) 142, 336
BstF5I GGATG 4 cut(s) 215, 236, 811, 1147
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 2 cut(s) 474, 976
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 2 cut(s) 471, 973
BstMCI CGRYCG 1 cut(s) 638
BstMWI GCNNNNNNNGC 1 cut(s) 886
BstNI CCWGG 2 cut(s) 99, 196
BstNSI RCATGY 2 cut(s) 73, 1010
BstSCI CCNGG 3 cut(s) 97, 194, 637
BstSFI CTRYAG 3 cut(s) 78, 306, 446
BstV1I GCAGC 4 cut(s) 469, 755, 1022, 1025
BstX2I RGATCY 1 cut(s) 471
BstXI CCANNNNNNTGG 2 cut(s) 377, 468
BstYI RGATCY 1 cut(s) 471
Bsu15I ATCGAT 3 cut(s) 495, 675, 976
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 434
BsuTUI ATCGAT 3 cut(s) 495, 675, 976
BtsCI GGATG 4 cut(s) 215, 236, 811, 1147
BtsIMutI CAGTG 4 cut(s) 405, 461, 487, 537
Cac8I GCNNGC 2 cut(s) 748, 1008
CfoI GCGC 1 cut(s) 728
Cfr13I GGNCC 2 cut(s) 95, 380
ClaI ATCGAT 3 cut(s) 495, 675, 976
Csp6I GTAC 3 cut(s) 154, 340, 593
CviAII CATG 9 cut(s) 70, 268, 584, 729, 751, 811, 886, 1007, 1049
CviJI RGCY 9 cut(s) 47, 83, 109, 434, 554, 599, 838, 880, 1065
CviKI_1 RGCY 9 cut(s) 47, 83, 109, 434, 554, 599, 838, 880, 1065
CviQI GTAC 3 cut(s) 154, 340, 593
DdeI CTNAG 2 cut(s) 142, 336
DpnI GATC 2 cut(s) 473, 975
DpnII GATC 2 cut(s) 471, 973
DraI TTTAAA 1 cut(s) 427
Eco24I GRGCYC 1 cut(s) 556
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 95, 380
Eco72I CACGTG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 97, 194
EcoRV GATATC 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 556
FaeI CATG 9 cut(s) 73, 271, 587, 732, 754, 814, 889, 1010, 1052
FaqI GGGAC 2 cut(s) 17, 808
FatI CATG 9 cut(s) 69, 267, 583, 728, 750, 810, 885, 1006, 1048
FauNDI CATATG 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 483, 744, 1011, 1014
FokI GGATG 4 cut(s) 222, 243, 818, 1154
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 4 cut(s) 483, 744, 1011, 1014
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 727
GluI GCNGC 4 cut(s) 483, 744, 1011, 1014
HaeIII GGCC 1 cut(s) 434
HapII CCGG 2 cut(s) 435, 638
HhaI GCGC 1 cut(s) 728
Hin1II CATG 9 cut(s) 73, 271, 587, 732, 754, 814, 889, 1010, 1052
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HincII GTYRAC 3 cut(s) 75, 865, 998
HindII GTYRAC 3 cut(s) 75, 865, 998
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 50, 133, 631, 783, 850
HpaII CCGG 2 cut(s) 435, 638
Hpy166II GTNNAC 5 cut(s) 75, 156, 717, 865, 998
Hpy188I TCNGA 2 cut(s) 132, 700
Hpy188III TCNNGA 4 cut(s) 397, 469, 517, 616
Hpy8I GTNNAC 5 cut(s) 75, 156, 717, 865, 998
HpyAV CCTTC 2 cut(s) 432, 613
HpyCH4III ACNGT 6 cut(s) 292, 465, 491, 532, 541, 1093
HpyCH4IV ACGT 3 cut(s) 221, 1069, 1146
HpyCH4V TGCA 5 cut(s) 213, 416, 743, 1006, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 886
HpyF3I CTNAG 2 cut(s) 142, 336
HpySE526I ACGT 3 cut(s) 221, 1069, 1146
Hsp92II CATG 9 cut(s) 73, 271, 587, 732, 754, 814, 889, 1010, 1052
HspAI GCGC 1 cut(s) 726
Kzo9I GATC 2 cut(s) 471, 973
Lsp1109I GCAGC 4 cut(s) 469, 755, 1022, 1025
LweI GCATC 4 cut(s) 16, 200, 301, 425
MaeI CTAG 1 cut(s) 92
MaeII ACGT 3 cut(s) 221, 1069, 1146
MaeIII GTNAC 5 cut(s) 137, 403, 562, 1058, 1147
MalI GATC 2 cut(s) 473, 975
MboI GATC 2 cut(s) 471, 973
MboII GAAGA 6 cut(s) 45, 521, 532, 700, 703, 845
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 9 cut(s) 126, 262, 710, 828, 858, 873, 1033, 1103, 1122
MlyI GAGTC 2 cut(s) 127, 792
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 4 cut(s) 127, 600, 797, 935
Mph1103I ATGCAT 1 cut(s) 418
MseI TTAA 6 cut(s) 39, 426, 960, 992, 1025, 1107
MslI CAYNNNNRTG 2 cut(s) 21, 161
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 435, 638
MspR9I CCNGG 3 cut(s) 99, 196, 639
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 2 cut(s) 99, 196
MwoI GCNNNNNNNGC 1 cut(s) 886
NciI CCSGG 1 cut(s) 639
NdeI CATATG 1 cut(s) 321
NdeII GATC 2 cut(s) 471, 973
NlaIII CATG 9 cut(s) 73, 271, 587, 732, 754, 814, 889, 1010, 1052
NlaIV GGNNCC 1 cut(s) 473
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 2 cut(s) 73, 1010
PaeI GCATGC 1 cut(s) 1010
PciI ACATGT 1 cut(s) 69
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 3 cut(s) 50, 631, 850
PkrI GCNGC 4 cut(s) 484, 745, 1012, 1015
PleI GAGTC 2 cut(s) 127, 791
PmaCI CACGTG 1 cut(s) 222
PmlI CACGTG 1 cut(s) 222
PpsI GAGTC 2 cut(s) 127, 791
Ppu21I YACGTR 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 95
PscI ACATGT 1 cut(s) 69
PsiI TTATAA 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 97, 194
PspCI CACGTG 1 cut(s) 222
PspGI CCWGG 2 cut(s) 97, 194
PspN4I GGNNCC 1 cut(s) 473
PspPI GGNCC 2 cut(s) 95, 380
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 1 cut(s) 471
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 3 cut(s) 155, 341, 594
RsaNI GTAC 3 cut(s) 154, 340, 593
RseI CAYNNNNRTG 2 cut(s) 21, 161
SaqAI TTAA 6 cut(s) 39, 426, 960, 992, 1025, 1107
SatI GCNGC 4 cut(s) 483, 744, 1011, 1014
Sau3AI GATC 2 cut(s) 471, 973
Sau96I GGNCC 2 cut(s) 95, 380
SchI GAGTC 2 cut(s) 127, 792
ScrFI CCNGG 3 cut(s) 99, 196, 639
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 4 cut(s) 16, 200, 301, 425
SfcI CTRYAG 3 cut(s) 78, 306, 446
SinI GGWCC 2 cut(s) 95, 380
SmiMI CAYNNNNRTG 2 cut(s) 21, 161
SphI GCATGC 1 cut(s) 1010
Sse9I AATT 9 cut(s) 126, 262, 710, 828, 858, 873, 1033, 1103, 1122
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 3 cut(s) 97, 194, 637
TaaI ACNGT 6 cut(s) 292, 465, 491, 532, 541, 1093
TaiI ACGT 3 cut(s) 224, 1072, 1149
TaqI TCGA 8 cut(s) 495, 634, 649, 675, 789, 976, 1045, 1098
TasI AATT 9 cut(s) 126, 262, 710, 828, 858, 873, 1033, 1103, 1122
TatI WGTACW 2 cut(s) 153, 339
TfiI GAWTC 3 cut(s) 50, 631, 850
Tru1I TTAA 6 cut(s) 39, 426, 960, 992, 1025, 1107
Tru9I TTAA 6 cut(s) 39, 426, 960, 992, 1025, 1107
TscAI CASTG 4 cut(s) 412, 468, 494, 544
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 4 cut(s) 482, 743, 1010, 1013
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 5 cut(s) 138, 179, 256, 338, 1028
TspRI CASTG 4 cut(s) 412, 468, 494, 544
VpaK11BI GGWCC 2 cut(s) 95, 380
XapI RAATTY 5 cut(s) 126, 262, 828, 873, 1033
XceI RCATGY 2 cut(s) 73, 1010
XspI CTAG 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.