pycom11g16050

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
17266304 .. 17267275
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16050.1

Sequence Viewer

Length: 972 bp
ATGAGATGGGGAACAAGTGTTAAAGAATCACAACCAACACCACCAATAGCCCCAAGTTTATATAAGTCATCCAAAGCACATCAAAAGAGTGTTTGGAGTTATTTCACTGGAGGTAATGTGAAGGAGGGAATAGGGCGTCTAATTAGCAAGTTCTTTATCTATGAAAATGTCCCTGCTGAGAAGGCATCATCACATCATTTCAAAAATATGGTATTGGGATGTCAACAGGCCGGTGTTGGAGTACAACCTCCCACTCCCTATGAGGTAAGAAACAAATATTTGGAAATGGAGTATAAAGACATTGGTTATGTTAACAAGTTGAGGTCAAAGTGGGAAACTAATGGTTGCACAATCATGTGTGACGGATGGACTGGCCCGACCAGATTGTCTATCATAAACTTCAAGGTATACTCCAAGGGAAAGACAATTTTTTTGAAGTCCGTTGATGCTTCAGACCATATAAAGAACTACAAGTATATTTACAAATTATTGAGGGATGTAATCATGGAGGTGGGAGAGCATAATGTTGTCCAAGTCGTGACCGACAACGGTTCTGCATTTGTCAAAGCTGGAAAAAAGTTAATGAAGCATCATAATGTGTTTTGGACATCATGTGCAGCATATTGTATTGATCTCATGTTTGAGGCAATGGGAAAAAAAGAGAATATTGCTAATGTCGTAAAAAGAGCTAGAACAATCACAAATTATATTTACAATCATGGTTGGTTGTTGGCAAAGATGCGTGAATTTTGCAAAGGAGAAATTATTCATCCAGCTACCACTCAATTCGCCACCAACTATATTGCATTAAACAACCTACTTAAGAAGAAAGCAGGGTTGAAGCAACTATTCATTAGTGACGATTGGGCCAACCATAATTTCAACCGCTCAAATGCAGGTCGTATAGTGGAAAGTATAGTGCTTGATCGATCCTTTTTGGACTCAATCAGAACATGTGTGCCAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

324

Amino Acids

36.74

Weight (kDa)

9.56

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 84 - 233 5.6e-50 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 887
AccBSI CCGCTC 1 cut(s) 888
AccI GTMKAC 1 cut(s) 408
AciI CCGC 1 cut(s) 886
AclWI GGATC 1 cut(s) 924
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 1 cut(s) 243
AflII CTTAAG 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 953
AgsI TTSAA 5 cut(s) 202, 403, 436, 841, 883
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AluBI AGCT 3 cut(s) 569, 689, 776
AluI AGCT 3 cut(s) 569, 689, 776
AlwI GGATC 1 cut(s) 924
AoxI GGCC 3 cut(s) 228, 373, 867
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 746
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
Asp700I GAANNNNTTC 1 cut(s) 765
AspS9I GGNCC 2 cut(s) 374, 867
BbvI GCAGC 1 cut(s) 629
BccI CCATC 1 cut(s) 360
BfaI CTAG 1 cut(s) 690
BfrI CTTAAG 1 cut(s) 821
BfuAI ACCTGC 1 cut(s) 887
BisI GCNGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 374, 867
BmsI GCATC 4 cut(s) 194, 436, 598, 729
BpmI CTGGAG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 928
BsaHI GRCGYC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 112, 376
Bse3DI GCAATG 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 928
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 5 cut(s) 68, 224, 371, 502, 769
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 112, 376
BseXI GCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 3 cut(s) 230, 375, 869
BshVI ATCGAT 1 cut(s) 928
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 3 cut(s) 230, 375, 869
Bsp143I GATC 3 cut(s) 631, 925, 929
BspACI CCGC 1 cut(s) 886
BspANI GGCC 3 cut(s) 230, 375, 869
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 928
BspMI ACCTGC 1 cut(s) 887
BspPI GGATC 1 cut(s) 924
BspTI CTTAAG 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 888
BsrDI GCAATG 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 2 cut(s) 112, 376
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 3 cut(s) 631, 925, 929
BssNAI GTATAC 1 cut(s) 409
BssNI GRCGYC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 414
Bst1107I GTATAC 1 cut(s) 409
Bst4CI ACNGT 2 cut(s) 551, 967
BstACI GRCGYC 1 cut(s) 136
BstAFI CTTAAG 1 cut(s) 821
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 5 cut(s) 68, 224, 371, 502, 769
BstKTI GATC 3 cut(s) 634, 928, 932
BstMBI GATC 3 cut(s) 631, 925, 929
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 957
BstV1I GCAGC 1 cut(s) 629
BstZ17I GTATAC 1 cut(s) 409
Bsu15I ATCGAT 1 cut(s) 928
BsuRI GGCC 3 cut(s) 230, 375, 869
BsuTUI ATCGAT 1 cut(s) 928
BtsCI GGATG 5 cut(s) 68, 224, 371, 502, 769
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 887
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 374, 867
ClaI ATCGAT 1 cut(s) 928
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 242
CviAII CATG 6 cut(s) 355, 505, 612, 637, 719, 954
CviJI RGCY 7 cut(s) 50, 230, 375, 569, 689, 776, 869
CviKI_1 RGCY 7 cut(s) 50, 230, 375, 569, 689, 776, 869
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 633, 927, 931
DpnII GATC 3 cut(s) 631, 925, 929
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 6 cut(s) 358, 508, 615, 640, 722, 957
FaqI GGGAC 1 cut(s) 155
FatI CATG 6 cut(s) 354, 504, 611, 636, 718, 953
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 618
FokI GGATG 5 cut(s) 55, 231, 378, 509, 756
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 1 cut(s) 690
GluI GCNGC 1 cut(s) 618
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 230, 375, 869
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 6 cut(s) 358, 508, 615, 640, 722, 957
HincII GTYRAC 2 cut(s) 224, 313
HindII GTYRAC 2 cut(s) 224, 313
HinfI GANTC 2 cut(s) 26, 941
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 3 cut(s) 224, 313, 409
Hpy188I TCNGA 2 cut(s) 454, 950
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 3 cut(s) 224, 313, 409
HpyAV CCTTC 2 cut(s) 115, 175
HpyCH4III ACNGT 2 cut(s) 551, 967
HpyCH4V TGCA 6 cut(s) 348, 557, 617, 753, 806, 896
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 6 cut(s) 358, 508, 615, 640, 722, 957
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 3 cut(s) 631, 925, 929
Lsp1109I GCAGC 1 cut(s) 629
LweI GCATC 4 cut(s) 194, 436, 598, 729
MaeI CTAG 1 cut(s) 690
MaeIII GTNAC 3 cut(s) 359, 538, 857
MalI GATC 3 cut(s) 633, 927, 931
MbiI CCGCTC 1 cut(s) 888
MboI GATC 3 cut(s) 631, 925, 929
MboII GAAGA 1 cut(s) 838
MluCI AATT 8 cut(s) 141, 426, 485, 703, 746, 762, 785, 877
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 8 cut(s) 104, 118, 256, 258, 315, 486, 502, 637
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 5 cut(s) 21, 312, 581, 809, 822
MslI CAYNNNNRTG 3 cut(s) 353, 509, 594
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 3 cut(s) 631, 925, 929
NlaIII CATG 6 cut(s) 358, 508, 615, 640, 722, 957
NmuCI GTSAC 3 cut(s) 359, 538, 857
NspI RCATGY 1 cut(s) 957
PciI ACATGT 1 cut(s) 953
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 619
PleI GAGTC 1 cut(s) 935
PpsI GAGTC 1 cut(s) 935
PscI ACATGT 1 cut(s) 953
PspPI GGNCC 2 cut(s) 374, 867
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 3 cut(s) 353, 509, 594
SaqAI TTAA 5 cut(s) 21, 312, 581, 809, 822
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 3 cut(s) 631, 925, 929
Sau96I GGNCC 2 cut(s) 374, 867
SchI GAGTC 1 cut(s) 935
SfaNI GCATC 4 cut(s) 194, 436, 598, 729
SmiMI CAYNNNNRTG 3 cut(s) 353, 509, 594
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 8 cut(s) 141, 426, 485, 703, 746, 762, 785, 877
SsiI CCGC 1 cut(s) 886
SspI AATATT 2 cut(s) 278, 667
SspMI CTAG 1 cut(s) 690
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 551, 967
TaqI TCGA 1 cut(s) 928
TaqII GACCGA 1 cut(s) 557
TasI AATT 8 cut(s) 141, 426, 485, 703, 746, 762, 785, 877
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 5 cut(s) 21, 312, 581, 809, 822
Tru9I TTAA 5 cut(s) 21, 312, 581, 809, 822
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 3 cut(s) 359, 538, 857
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 3 cut(s) 359, 538, 857
TspDTI ATGAA 4 cut(s) 177, 599, 758, 841
TspGWI ACGGA 2 cut(s) 378, 430
TspRI CASTG 1 cut(s) 112
Vha464I CTTAAG 1 cut(s) 821
XapI RAATTY 1 cut(s) 746
XceI RCATGY 1 cut(s) 957
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.