Rmu_sc0005134.1_g000006

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005134.1
OG0000220
Physical Location & Seq
Reverse (-)
25259 .. 26047
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005134.1_g000006.1.cds

Sequence Viewer

Length: 789 bp
atgaagctgcggctgcgagataaacatgcaaagaataatgtggtcaatgagaacaactatatagatctacttcaagttgcaagcgagccgcttgataatggcattgatccacttcatggttggattatgcctgcatacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagagtcttatctgaagaagttgttaaaatcccagaagataatttagatagtgatgatgcgtggggtggtacagcaactccagatagttctgatgatggtggagagggtggaggtggaacaggtggtggaggtgaaagatatgaatatggacaatcatatgtggatggaggattccaatttacctgtgaaggtaattttgatcataccacccaagatgaagaccacggagtgagaatagctggtcatggtgctcaagagaagacccgatatgggaggaggactagaggtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttaggcatagagcgcagtgagatcttaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatgaatataatcaatatggagaagtatatgatcagtcatccagttgggttcatccttattatccccttataggggaaacagtcggcagctctaaagagatctataactatcatattcatcactacaattcgcactatatgagtcatgtgtcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

262

Amino Acids

28.93

Weight (kDa)

4.5

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 2 cut(s) 10, 89
AclWI GGATC 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 243
AdeI CACNNNGTG 1 cut(s) 439
AfaI GTAC 2 cut(s) 280, 517
AfiI CCNNNNNNNGG 5 cut(s) 116, 480, 704, 705, 706
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 2 cut(s) 74, 537
AluBI AGCT 4 cut(s) 7, 152, 449, 723
AluI AGCT 4 cut(s) 7, 152, 449, 723
Alw21I GWGCWC 1 cut(s) 463
AlwI GGATC 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 7, 13, 720
AspLEI GCGC 1 cut(s) 579
AsuHPI GGTGA 1 cut(s) 353
BbsI GAAGAC 3 cut(s) 163, 435, 476
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 1 cut(s) 732
BccI CCATC 3 cut(s) 299, 368, 529
BclI TGATCA 3 cut(s) 409, 508, 664
BfaI CTAG 1 cut(s) 492
BfrI CTTAAG 1 cut(s) 544
BglII AGATCT 3 cut(s) 64, 585, 732
BisI GCNGC 5 cut(s) 8, 11, 14, 89, 721
BlsI GCNGC 5 cut(s) 9, 12, 15, 90, 722
BmsI GCATC 2 cut(s) 256, 619
BpiI GAAGAC 3 cut(s) 163, 435, 476
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 480, 704, 705, 706
Bse1I ACTGG 1 cut(s) 675
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 3 cut(s) 379, 671, 685
BseLI CCNNNNNNNGG 5 cut(s) 116, 480, 704, 705, 706
BseNI ACTGG 1 cut(s) 675
BseRI GAGGAG 1 cut(s) 499
BseXI GCAGC 1 cut(s) 732
BsiHKAI GWGCWC 1 cut(s) 463
BslI CCNNNNNNNGG 5 cut(s) 116, 480, 704, 705, 706
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
BspACI CCGC 2 cut(s) 10, 89
BspHI TCATGA 1 cut(s) 601
BspPI GGATC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 544
BsrI ACTGG 1 cut(s) 675
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
Bst4CI ACNGT 1 cut(s) 715
Bst6I CTCTTC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 82, 86, 132
BstDEI CTNAG 1 cut(s) 786
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 3 cut(s) 379, 671, 685
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 7 cut(s) 67, 109, 412, 511, 588, 667, 735
BstMBI GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
BstMWI GCNNNNNNNGC 3 cut(s) 13, 191, 576
BstNSI RCATGY 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 732
BstV2I GAAGAC 3 cut(s) 163, 435, 476
BstX2I RGATCY 3 cut(s) 64, 585, 732
BstYI RGATCY 3 cut(s) 64, 585, 732
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 3 cut(s) 379, 671, 685
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 3 cut(s) 82, 86, 132
CciI TCATGA 1 cut(s) 601
CfoI GCGC 1 cut(s) 579
Csp6I GTAC 2 cut(s) 279, 516
CviAII CATG 5 cut(s) 26, 116, 455, 602, 779
CviJI RGCY 6 cut(s) 7, 13, 88, 152, 449, 723
CviKI_1 RGCY 6 cut(s) 7, 13, 88, 152, 449, 723
CviQI GTAC 2 cut(s) 279, 516
DdeI CTNAG 1 cut(s) 786
DpnI GATC 7 cut(s) 66, 108, 411, 510, 587, 666, 734
DpnII GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
DraIII CACNNNGTG 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 5 cut(s) 29, 119, 458, 605, 782
FatI CATG 5 cut(s) 25, 115, 454, 601, 778
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 3 cut(s) 409, 508, 664
Fnu4HI GCNGC 5 cut(s) 8, 11, 14, 89, 721
FokI GGATG 3 cut(s) 386, 658, 672
Fsp4HI GCNGC 5 cut(s) 8, 11, 14, 89, 721
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 578
GluI GCNGC 5 cut(s) 8, 11, 14, 89, 721
GsuI CTGGAG 1 cut(s) 273
HhaI GCGC 1 cut(s) 579
Hin1II CATG 5 cut(s) 29, 119, 458, 605, 782
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 6 cut(s) 198, 213, 381, 554, 596, 775
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 3 cut(s) 223, 301, 526
Hpy188III TCNNGA 3 cut(s) 290, 464, 602
HpyAV CCTTC 2 cut(s) 392, 599
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 29, 80, 134, 185, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 191, 576
HpyF3I CTNAG 1 cut(s) 786
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 29, 119, 458, 605, 782
HspAI GCGC 1 cut(s) 577
Ksp22I TGATCA 3 cut(s) 409, 508, 664
Kzo9I GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
LpnPI CCDG 9 cut(s) 138, 144, 180, 255, 303, 315, 406, 435, 688
Lsp1109I GCAGC 1 cut(s) 732
LweI GCATC 2 cut(s) 256, 619
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 204
MalI GATC 7 cut(s) 66, 108, 411, 510, 587, 666, 734
MboI GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
MboII GAAGA 7 cut(s) 155, 168, 236, 257, 440, 481, 525
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 3 cut(s) 64, 585, 732
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 6 cut(s) 250, 386, 403, 537, 617, 760
MlyI GAGTC 3 cut(s) 222, 548, 784
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 9 cut(s) 149, 171, 307, 314, 332, 371, 477, 480, 488
MseI TTAA 3 cut(s) 234, 545, 590
MspCI CTTAAG 1 cut(s) 544
MunI CAATTG 1 cut(s) 537
MwoI GCNNNNNNNGC 3 cut(s) 13, 191, 576
NdeI CATATG 1 cut(s) 367
NdeII GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
NlaIII CATG 5 cut(s) 29, 119, 458, 605, 782
NspI RCATGY 1 cut(s) 29
PagI TCATGA 1 cut(s) 601
PfeI GAWTC 3 cut(s) 198, 381, 596
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 5 cut(s) 9, 12, 15, 90, 722
PleI GAGTC 3 cut(s) 221, 548, 783
PpsI GAGTC 3 cut(s) 221, 548, 783
PsuI RGATCY 3 cut(s) 64, 585, 732
RsaI GTAC 2 cut(s) 280, 517
RsaNI GTAC 2 cut(s) 279, 516
SaqAI TTAA 3 cut(s) 234, 545, 590
SatI GCNGC 5 cut(s) 8, 11, 14, 89, 721
Sau3AI GATC 7 cut(s) 64, 106, 409, 508, 585, 664, 732
SchI GAGTC 3 cut(s) 222, 548, 784
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 2 cut(s) 256, 619
SmlI CTYRAG 2 cut(s) 462, 544
SmoI CTYRAG 2 cut(s) 462, 544
Sse9I AATT 6 cut(s) 250, 386, 403, 537, 617, 760
SsiI CCGC 2 cut(s) 10, 89
SspMI CTAG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 715
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 141
TasI AATT 6 cut(s) 250, 386, 403, 537, 617, 760
TauI GCSGC 2 cut(s) 13, 91
TfiI GAWTC 3 cut(s) 198, 381, 596
Tru1I TTAA 3 cut(s) 234, 545, 590
Tru9I TTAA 3 cut(s) 234, 545, 590
TscAI CASTG 1 cut(s) 586
TseI GCWGC 3 cut(s) 7, 13, 720
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 544
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.