FvH4_5g27011

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000220
Physical Location & Seq
Forward (+)
18324866 .. 18325591
726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27011.t1

Sequence Viewer

Length: 441 bp
ATGGGTGCCGTTTATGAGCTGATGCGCGTAGTGAAACAAGAGTTGGAACAAAAACATGGTGCAAAGTGGGTGGTAAAAATTATCAATGATCGGTGGTTTAAAACTTTATGGCATGATTTGCATTCGGCAGGGTATTACTTAAATCCTCGATACAACTATAAACCAGGCGTCGGAGATAATTATAAGCTTCTTGAAGCTGTGCATAATGTTTTTGCAAAATTGGATCCTAACTGTCCAACAATAGGACAATTTGGAAAAGAGCTTACATATTTTAAAGACGCAAGGTTAAATTTTGGCACACCGGCAGCTATTGCATCGAGAACAGAGATGTCTCCTACCGACTGGTGGGTAATGTATGGGAGTAGTGCCCCAACTGTGAGAAGGTTAGCTATCAAAGTATTATCACAAACGGCGTCAGCATCTGCGTGTGAGAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

147

Amino Acids

16.66

Weight (kDa)

9.37

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 108 - 145 3.4e-07 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 27
AclWI GGATC 2 cut(s) 218, 231
AcsI RAATTY 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 168, 413
AfiI CCNNNNNNNGG 3 cut(s) 170, 242, 345
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 6 cut(s) 19, 187, 197, 262, 308, 389
AluI AGCT 6 cut(s) 19, 187, 197, 262, 308, 389
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 2 cut(s) 218, 231
AlwNI CAGNNNCTG 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 289
AspLEI GCGC 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 370
BamHI GGATCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 1 cut(s) 439
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 7, 225
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 3 cut(s) 12, 323, 428
BsaHI GRCGYC 2 cut(s) 168, 413
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 242, 345
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 170, 242, 345
BseNI ACTGG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 170, 242, 345
BsmAI GTCTC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 2 cut(s) 88, 223
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 7, 225
BspPI GGATC 2 cut(s) 218, 231
BspT107I GGYRCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 301
BssMI GATC 2 cut(s) 88, 223
BssNI GRCGYC 2 cut(s) 168, 413
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 233, 376
BstACI GRCGYC 2 cut(s) 168, 413
BstAPI GCANNNNNTGC 2 cut(s) 118, 311
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 2 cut(s) 91, 226
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 2 cut(s) 88, 223
BstMWI GCNNNNNNNGC 2 cut(s) 118, 311
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 301
CseI GACGC 3 cut(s) 157, 287, 402
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 2 cut(s) 56, 113
CviJI RGCY 6 cut(s) 19, 187, 197, 262, 308, 389
CviKI_1 RGCY 6 cut(s) 19, 187, 197, 262, 308, 389
DpnI GATC 2 cut(s) 90, 225
DpnII GATC 2 cut(s) 88, 223
DraI TTTAAA 2 cut(s) 100, 274
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 59, 116
FaiI YATR 9 cut(s) 15, 57, 109, 114, 159, 183, 204, 268, 357
FatI CATG 2 cut(s) 55, 112
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 439
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 306
HapII CCGG 1 cut(s) 302
HgaI GACGC 3 cut(s) 157, 287, 402
HhaI GCGC 1 cut(s) 27
Hin1I GRCGYC 2 cut(s) 168, 413
Hin1II CATG 2 cut(s) 59, 116
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 191, 318
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 2 cut(s) 233, 376
HpyCH4V TGCA 5 cut(s) 62, 121, 202, 215, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 311
Hsp92I GRCGYC 2 cut(s) 168, 413
Hsp92II CATG 2 cut(s) 59, 116
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 88, 223
LpnPI CCDG 5 cut(s) 114, 150, 177, 315, 328
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 3 cut(s) 12, 323, 428
MaeI CTAG 1 cut(s) 439
MalI GATC 2 cut(s) 90, 225
MboI GATC 2 cut(s) 88, 223
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 5 cut(s) 78, 178, 218, 248, 289
MmeI TCCRAC 3 cut(s) 24, 151, 260
MnlI CCTC 2 cut(s) 156, 426
MseI TTAA 4 cut(s) 99, 140, 273, 287
MslI CAYNNNNRTG 1 cut(s) 424
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 118, 311
NdeII GATC 2 cut(s) 88, 223
NlaIII CATG 2 cut(s) 59, 116
NlaIV GGNNCC 2 cut(s) 7, 225
PctI GAATGC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 307
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 7, 225
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 424
SaqAI TTAA 4 cut(s) 99, 140, 273, 287
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 2 cut(s) 88, 223
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 370
SetI ASST 8 cut(s) 21, 189, 199, 264, 287, 310, 386, 391
SfaNI GCATC 3 cut(s) 12, 323, 428
SmiMI CAYNNNNRTG 1 cut(s) 424
Sse9I AATT 5 cut(s) 78, 178, 218, 248, 289
SspMI CTAG 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 233, 376
TaqI TCGA 2 cut(s) 148, 317
TasI AATT 5 cut(s) 78, 178, 218, 248, 289
Tru1I TTAA 4 cut(s) 99, 140, 273, 287
Tru9I TTAA 4 cut(s) 99, 140, 273, 287
TseI GCWGC 1 cut(s) 305
XapI RAATTY 1 cut(s) 289
XspI CTAG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.