Rmu_sc0006754.1_g000001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006754.1
OG0000220
Physical Location & Seq
Forward (+)
1324 .. 3801
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006754.1_g000001.1.cds

Sequence Viewer

Length: 1203 bp
atgtcatctggaagggactgccaaccaggtgacgcatcggatgggactgccaataaagctgttgtctggaagggactgccaaccaaactattacctagaagggactgccaactaggtgaggaaaaaatcccctcaaggcgaatctttaccccggagaaataccctcaaggcgattttggaaggaagtcaaggaaccaagcaaaggaacgtttggcatatcagaagttggaaaagcttgtatactgctactacaacgtgaagctgcggttgcgagataaacaggcaaagaataatgtggtcaatgaaaacaactatatagatctacttcatgttgcaagcgagccgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgttggaatcaacgtagagagagtcttatctaaagaagttgttaaaaacccaaaagataattcagatagtgatgatgtatggggtggtacagcaactccagatagttttgatgatggtggagagggtggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatgaaagattccaatttacctgtgaaggtaattttgatcataccacccaagatgaagacgaatatggacaatcttctgtgaatggaggatttcaatttacttgtgaaggtaattttgatcatgtcacccaagatgaagaccacggagtgagaacaactgatcatggtgctcaagagaagacccgatatgggaggaggactagaggttcaactgatgatcaaagtatcacatctgatgtttcttcaattgccttaagttttgactttatcaatttaggcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatggatataatcaatatggagaagtatatgatcagtcatccagttgggttcatccttattattcctttataggagaaacagtcggcaactctaaagtgatctataattatcatattcatcactacaattcgcactatatgggtcatatgtcttggtctgattattgcattttagtagaccagcgagaggcctttcaccatccagttgggttcatccttattattcctttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

400

Amino Acids

44.98

Weight (kDa)

5.0

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 240, 1146
AciI CCGC 3 cut(s) 265, 344, 579
AclI AACGTT 1 cut(s) 208
AclWI GGATC 2 cut(s) 356, 929
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 3 cut(s) 202, 816, 1156
AflII CTTAAG 1 cut(s) 880
AgsI TTSAA 3 cut(s) 722, 837, 873
AjnI CCWGG 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
AloI GAACNNNNNNTCC 2 cut(s) 817, 849
AluBI AGCT 4 cut(s) 59, 235, 262, 407
AluI AGCT 4 cut(s) 59, 235, 262, 407
Alw21I GWGCWC 1 cut(s) 799
AlwI GGATC 2 cut(s) 356, 929
AoxI GGCC 1 cut(s) 1158
ApeKI GCWGC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 915
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 5 cut(s) 41, 128, 608, 745, 1157
BbsI GAAGAC 4 cut(s) 418, 690, 771, 812
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 1 cut(s) 249
BccI CCATC 3 cut(s) 35, 554, 1176
BciT130I CCWGG 1 cut(s) 27
BclI TGATCA 5 cut(s) 664, 745, 787, 844, 1000
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 3 cut(s) 96, 113, 828
BfrI CTTAAG 1 cut(s) 880
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 263, 344
BlsI GCNGC 2 cut(s) 264, 345
Bme1390I CCNGG 2 cut(s) 27, 152
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 27, 152
BmsI GCATC 2 cut(s) 44, 955
BpiI GAAGAC 4 cut(s) 418, 690, 771, 812
BpmI CTGGAG 1 cut(s) 528
BpuEI CTTGAG 3 cut(s) 118, 150, 783
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 150, 769
BsaXI ACNNNNNCTCC 4 cut(s) 526, 556, 1035, 1065
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 816, 1156
Bse1I ACTGG 2 cut(s) 1011, 1172
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 150, 769
BseGI GGATG 6 cut(s) 46, 634, 1007, 1021, 1168, 1182
BseLI CCNNNNNNNGG 3 cut(s) 202, 816, 1156
BseNI ACTGG 2 cut(s) 1011, 1172
BseRI GAGGAG 1 cut(s) 835
BseXI GCAGC 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 1 cut(s) 1160
BsiHKAI GWGCWC 1 cut(s) 799
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 4 cut(s) 29, 58, 87, 116
BslI CCNNNNNNNGG 3 cut(s) 202, 816, 1156
BsmFI GGGAC 4 cut(s) 29, 58, 87, 116
BsnI GGCC 1 cut(s) 1160
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
BspACI CCGC 3 cut(s) 265, 344, 579
BspANI GGCC 1 cut(s) 1160
BspHI TCATGA 2 cut(s) 370, 937
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 2 cut(s) 356, 929
BspTI CTTAAG 1 cut(s) 880
BsrI ACTGG 2 cut(s) 1011, 1172
BssECI CCNNGG 2 cut(s) 150, 769
BssMI GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
BssNAI GTATAC 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 1051
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 880
BstC8I GCNNGC 3 cut(s) 337, 341, 387
BstDSI CCRYGG 1 cut(s) 769
BstF5I GGATG 6 cut(s) 46, 634, 1007, 1021, 1168, 1182
BstHHI GCGC 1 cut(s) 915
BstKTI GATC 9 cut(s) 322, 364, 667, 748, 790, 847, 924, 1003, 1071
BstMBI GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
BstMWI GCNNNNNNNGC 3 cut(s) 56, 268, 912
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 25, 150
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 4 cut(s) 418, 690, 771, 812
BstX2I RGATCY 2 cut(s) 319, 921
BstXI CCANNNNNNTGG 1 cut(s) 1175
BstYI RGATCY 2 cut(s) 319, 921
BstZ17I GTATAC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 1160
BtgI CCRYGG 1 cut(s) 769
BtsCI GGATG 6 cut(s) 46, 634, 1007, 1021, 1168, 1182
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 1 cut(s) 922
Cac8I GCNNGC 3 cut(s) 337, 341, 387
CciI TCATGA 2 cut(s) 370, 937
CfoI GCGC 1 cut(s) 915
CseI GACGC 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 1 cut(s) 534
CviAII CATG 5 cut(s) 329, 371, 749, 791, 938
CviJI RGCY 6 cut(s) 59, 235, 262, 343, 407, 1160
CviKI_1 RGCY 6 cut(s) 59, 235, 262, 343, 407, 1160
CviQI GTAC 1 cut(s) 534
DpnI GATC 9 cut(s) 321, 363, 666, 747, 789, 846, 923, 1002, 1070
DpnII GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
DraIII CACNNNGTG 1 cut(s) 775
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco147I AGGCCT 1 cut(s) 1160
EcoRII CCWGG 1 cut(s) 25
FaeI CATG 5 cut(s) 332, 374, 752, 794, 941
FaqI GGGAC 4 cut(s) 29, 58, 87, 116
FatI CATG 5 cut(s) 328, 370, 748, 790, 937
FauNDI CATATG 1 cut(s) 1116
FbaI TGATCA 5 cut(s) 664, 745, 787, 844, 1000
FblI GTMKAC 2 cut(s) 240, 1146
Fnu4HI GCNGC 2 cut(s) 263, 344
FokI GGATG 6 cut(s) 53, 641, 994, 1008, 1155, 1169
Fsp4HI GCNGC 2 cut(s) 263, 344
FspBI CTAG 3 cut(s) 96, 113, 828
GlaI GCGC 1 cut(s) 914
GluI GCNGC 2 cut(s) 263, 344
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 1 cut(s) 1160
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 915
Hin1II CATG 5 cut(s) 332, 374, 752, 794, 941
Hin6I GCGC 1 cut(s) 913
HinP1I GCGC 1 cut(s) 913
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 5 cut(s) 141, 453, 468, 636, 932
HpaII CCGG 1 cut(s) 152
HphI GGTGA 5 cut(s) 41, 128, 608, 745, 1157
Hpy166II GTNNAC 2 cut(s) 241, 1147
Hpy188I TCNGA 5 cut(s) 40, 222, 511, 862, 1129
Hpy188III TCNNGA 6 cut(s) 9, 67, 371, 545, 800, 938
Hpy8I GTNNAC 2 cut(s) 241, 1147
HpyAV CCTTC 7 cut(s) 6, 64, 93, 174, 647, 728, 935
HpyCH4III ACNGT 1 cut(s) 1051
HpyCH4IV ACGT 3 cut(s) 208, 255, 459
HpyCH4V TGCA 4 cut(s) 335, 389, 440, 1137
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 268, 912
HpySE526I ACGT 3 cut(s) 208, 255, 459
Hsp92II CATG 5 cut(s) 332, 374, 752, 794, 941
HspAI GCGC 1 cut(s) 913
Ksp22I TGATCA 5 cut(s) 664, 745, 787, 844, 1000
Kzo9I GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 2 cut(s) 44, 955
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 3 cut(s) 96, 113, 828
MaeII ACGT 3 cut(s) 208, 255, 459
MaeIII GTNAC 2 cut(s) 29, 751
MalI GATC 9 cut(s) 321, 363, 666, 747, 789, 846, 923, 1002, 1070
MboI GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
MboII GAAGA 8 cut(s) 410, 423, 612, 693, 695, 776, 817, 861
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 2 cut(s) 319, 921
MhlI GDGCHC 1 cut(s) 799
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 2 cut(s) 207, 430
MseI TTAA 2 cut(s) 489, 881
MslI CAYNNNNRTG 1 cut(s) 396
MspCI CTTAAG 1 cut(s) 880
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 27, 152
MunI CAATTG 1 cut(s) 873
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 56, 268, 912
NciI CCSGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 1116
NdeII GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
NlaIII CATG 5 cut(s) 332, 374, 752, 794, 941
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 29, 751
PagI TCATGA 2 cut(s) 370, 937
PceI AGGCCT 1 cut(s) 1160
PfeI GAWTC 4 cut(s) 141, 453, 636, 932
PkrI GCNGC 2 cut(s) 264, 345
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Psp1406I AACGTT 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 194
PsuI RGATCY 2 cut(s) 319, 921
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 2 cut(s) 489, 881
SatI GCNGC 2 cut(s) 263, 344
Sau3AI GATC 9 cut(s) 319, 361, 664, 745, 787, 844, 921, 1000, 1068
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 27, 152
SduI GDGCHC 1 cut(s) 799
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 2 cut(s) 44, 955
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 4 cut(s) 133, 165, 798, 880
SmoI CTYRAG 4 cut(s) 133, 165, 798, 880
SseBI AGGCCT 1 cut(s) 1160
SsiI CCGC 3 cut(s) 265, 344, 579
SspMI CTAG 3 cut(s) 96, 113, 828
StuI AGGCCT 1 cut(s) 1160
StyD4I CCNGG 2 cut(s) 25, 150
TaaI ACNGT 1 cut(s) 1051
TaiI ACGT 3 cut(s) 211, 258, 462
TaqI TCGA 1 cut(s) 396
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 4 cut(s) 141, 453, 636, 932
Tru1I TTAA 2 cut(s) 489, 881
Tru9I TTAA 2 cut(s) 489, 881
TscAI CASTG 1 cut(s) 922
TseFI GTSAC 2 cut(s) 29, 751
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 2 cut(s) 29, 751
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 1 cut(s) 922
Vha464I CTTAAG 1 cut(s) 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XmiI GTMKAC 2 cut(s) 240, 1146
XspI CTAG 3 cut(s) 96, 113, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.