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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 323 |
| Acc36I | ACCTGC | 1 cut(s) | 323 |
| AccII | CGCG | 3 cut(s) | 275, 277, 368 |
| AciI | CCGC | 6 cut(s) | 23, 28, 202, 277, 511, 726 |
| AclWI | GGATC | 4 cut(s) | 106, 165, 180, 995 |
| AcoI | YGGCCR | 2 cut(s) | 237, 286 |
| AdeI | CACNNNGTG | 1 cut(s) | 841 |
| AfaI | GTAC | 1 cut(s) | 545 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 246, 882, 1106, 1107, 1108 |
| AflII | CTTAAG | 1 cut(s) | 946 |
| AflIII | ACRYGT | 1 cut(s) | 794 |
| AgsI | TTSAA | 3 cut(s) | 488, 695, 939 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 91, 183 |
| AjnI | CCWGG | 1 cut(s) | 371 |
| AluBI | AGCT | 4 cut(s) | 257, 482, 851, 1125 |
| AluI | AGCT | 4 cut(s) | 257, 482, 851, 1125 |
| Alw21I | GWGCWC | 2 cut(s) | 209, 865 |
| AlwI | GGATC | 4 cut(s) | 106, 165, 180, 995 |
| AoxI | GGCC | 7 cut(s) | 237, 286, 339, 354, 396, 401, 428 |
| ApeKI | GCWGC | 8 cut(s) | 61, 114, 133, 297, 300, 380, 479, 1122 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 457 |
| AspLEI | GCGC | 5 cut(s) | 275, 277, 368, 719, 981 |
| AspS9I | GGNCC | 1 cut(s) | 401 |
| AsuC2I | CCSGG | 1 cut(s) | 400 |
| AsuHPI | GGTGA | 5 cut(s) | 322, 371, 445, 755, 811 |
| BbsI | GAAGAC | 2 cut(s) | 837, 878 |
| Bbv12I | GWGCWC | 2 cut(s) | 209, 865 |
| BbvCI | CCTCAGC | 1 cut(s) | 258 |
| BbvI | GCAGC | 8 cut(s) | 48, 120, 126, 284, 287, 367, 491, 1134 |
| BccI | CCATC | 3 cut(s) | 278, 572, 770 |
| BceAI | ACGGC | 1 cut(s) | 273 |
| BciT130I | CCWGG | 1 cut(s) | 373 |
| BciVI | GTATCC | 1 cut(s) | 600 |
| BclI | TGATCA | 3 cut(s) | 811, 910, 1066 |
| BcnI | CCSGG | 1 cut(s) | 400 |
| BfaI | CTAG | 3 cut(s) | 852, 894, 1077 |
| BfmI | CTRYAG | 3 cut(s) | 414, 609, 633 |
| BfoI | RGCGCY | 1 cut(s) | 720 |
| BfrI | CTTAAG | 1 cut(s) | 946 |
| BfuAI | ACCTGC | 1 cut(s) | 323 |
| BfuI | GTATCC | 1 cut(s) | 600 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 294 |
| BglII | AGATCT | 1 cut(s) | 1134 |
| BisI | GCNGC | 8 cut(s) | 62, 115, 134, 298, 301, 381, 480, 1123 |
| BlsI | GCNGC | 8 cut(s) | 63, 116, 135, 299, 302, 382, 481, 1124 |
| Bme1390I | CCNGG | 2 cut(s) | 373, 400 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 91, 183 |
| BmgT120I | GGNCC | 1 cut(s) | 401 |
| BmrFI | CCNGG | 2 cut(s) | 373, 400 |
| BmsI | GCATC | 2 cut(s) | 303, 1021 |
| BpiI | GAAGAC | 2 cut(s) | 837, 878 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 492, 524 |
| BpmI | CTGGAG | 3 cut(s) | 28, 109, 371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 258 |
| BpuEI | CTTGAG | 1 cut(s) | 849 |
| BpuMI | CCSGG | 1 cut(s) | 400 |
| Bsa29I | ATCGAT | 1 cut(s) | 124 |
| BsaJI | CCNNGG | 2 cut(s) | 289, 835 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 246, 882, 1106, 1107, 1108 |
| Bse118I | RCCGGY | 5 cut(s) | 182, 239, 356, 403, 430 |
| Bse1I | ACTGG | 2 cut(s) | 92, 1216 |
| Bse3DI | GCAATG | 1 cut(s) | 520 |
| BseBI | CCWGG | 1 cut(s) | 373 |
| BseCI | ATCGAT | 1 cut(s) | 124 |
| BseDI | CCNNGG | 2 cut(s) | 289, 835 |
| BseGI | GGATG | 3 cut(s) | 289, 781, 1087 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 246, 882, 1106, 1107, 1108 |
| BseMI | GCAATG | 1 cut(s) | 520 |
| BseMII | CTCAG | 2 cut(s) | 249, 683 |
| BseNI | ACTGG | 2 cut(s) | 92, 1216 |
| BsePI | GCGCGC | 1 cut(s) | 273 |
| BseRI | GAGGAG | 4 cut(s) | 182, 436, 439, 901 |
| BseXI | GCAGC | 8 cut(s) | 48, 120, 126, 284, 287, 367, 491, 1134 |
| BseYI | CCCAGC | 1 cut(s) | 263 |
| Bsh1236I | CGCG | 3 cut(s) | 275, 277, 368 |
| Bsh1285I | CGRYCG | 3 cut(s) | 52, 128, 140 |
| BshFI | GGCC | 7 cut(s) | 239, 288, 341, 356, 398, 403, 430 |
| BshVI | ATCGAT | 1 cut(s) | 124 |
| BsiEI | CGRYCG | 3 cut(s) | 52, 128, 140 |
| BsiHKAI | GWGCWC | 2 cut(s) | 209, 865 |
| BsiSI | CCGG | 7 cut(s) | 164, 183, 240, 357, 399, 404, 431 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 246, 882, 1106, 1107, 1108 |
| BsnI | GGCC | 7 cut(s) | 239, 288, 341, 356, 398, 403, 430 |
| Bsp1286I | GDGCHC | 2 cut(s) | 209, 865 |
| Bsp1407I | TGTACA | 1 cut(s) | 543 |
| BspACI | CCGC | 6 cut(s) | 23, 28, 202, 277, 511, 726 |
| BspANI | GGCC | 7 cut(s) | 239, 288, 341, 356, 398, 403, 430 |
| BspCNI | CTCAG | 2 cut(s) | 250, 682 |
| BspDI | ATCGAT | 1 cut(s) | 124 |
| BspFNI | CGCG | 3 cut(s) | 275, 277, 368 |
| BspHI | TCATGA | 1 cut(s) | 1003 |
| BspMAI | CTGCAG | 2 cut(s) | 418, 613 |
| BspMI | ACCTGC | 1 cut(s) | 323 |
| BspPI | GGATC | 4 cut(s) | 106, 165, 180, 995 |
| BspTI | CTTAAG | 1 cut(s) | 946 |
| BsrDI | GCAATG | 1 cut(s) | 520 |
| BsrFI | RCCGGY | 5 cut(s) | 182, 239, 356, 403, 430 |
| BsrGI | TGTACA | 1 cut(s) | 543 |
| BsrI | ACTGG | 2 cut(s) | 92, 1216 |
| BssAI | RCCGGY | 5 cut(s) | 182, 239, 356, 403, 430 |
| BssECI | CCNNGG | 2 cut(s) | 289, 835 |
| BssHII | GCGCGC | 1 cut(s) | 273 |
| Bst2UI | CCWGG | 1 cut(s) | 373 |
| Bst4CI | ACNGT | 3 cut(s) | 69, 82, 649 |
| BstAFI | CTTAAG | 1 cut(s) | 946 |
| BstAUI | TGTACA | 1 cut(s) | 543 |
| BstC8I | GCNNGC | 3 cut(s) | 237, 275, 318 |
| BstDEI | CTNAG | 2 cut(s) | 258, 669 |
| BstDSI | CCRYGG | 2 cut(s) | 289, 835 |
| BstF5I | GGATG | 3 cut(s) | 289, 781, 1087 |
| BstFNI | CGCG | 3 cut(s) | 275, 277, 368 |
| BstH2I | RGCGCY | 1 cut(s) | 720 |
| BstHHI | GCGC | 5 cut(s) | 275, 277, 368, 719, 981 |
| BstMCI | CGRYCG | 3 cut(s) | 52, 128, 140 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 274, 294, 338, 723, 978 |
| BstNI | CCWGG | 1 cut(s) | 373 |
| BstNSI | RCATGY | 2 cut(s) | 604, 798 |
| BstSCI | CCNGG | 2 cut(s) | 371, 398 |
| BstSFI | CTRYAG | 3 cut(s) | 414, 609, 633 |
| BstUI | CGCG | 3 cut(s) | 275, 277, 368 |
| BstV1I | GCAGC | 8 cut(s) | 48, 120, 126, 284, 287, 367, 491, 1134 |
| BstV2I | GAAGAC | 2 cut(s) | 837, 878 |
| BstX2I | RGATCY | 4 cut(s) | 98, 157, 987, 1134 |
| BstYI | RGATCY | 4 cut(s) | 98, 157, 987, 1134 |
| Bsu15I | ATCGAT | 1 cut(s) | 124 |
| BsuI | GTATCC | 1 cut(s) | 600 |
| BsuRI | GGCC | 7 cut(s) | 239, 288, 341, 356, 398, 403, 430 |
| BsuTUI | ATCGAT | 1 cut(s) | 124 |
| BtgI | CCRYGG | 2 cut(s) | 289, 835 |
| BtsCI | GGATG | 3 cut(s) | 289, 781, 1087 |
| BtsI | GCAGTG | 1 cut(s) | 988 |
| BtsIMutI | CAGTG | 2 cut(s) | 74, 988 |
| BveI | ACCTGC | 1 cut(s) | 323 |
| Cac8I | GCNNGC | 3 cut(s) | 237, 275, 318 |
| CciI | TCATGA | 1 cut(s) | 1003 |
| CfoI | GCGC | 5 cut(s) | 275, 277, 368, 719, 981 |
| Cfr10I | RCCGGY | 5 cut(s) | 182, 239, 356, 403, 430 |
| Cfr13I | GGNCC | 1 cut(s) | 401 |
| ClaI | ATCGAT | 1 cut(s) | 124 |
| CsiI | ACCWGGT | 1 cut(s) | 371 |
| Csp6I | GTAC | 1 cut(s) | 544 |
| CviAII | CATG | 8 cut(s) | 441, 601, 629, 795, 815, 857, 1004, 1148 |
| CviQI | GTAC | 1 cut(s) | 544 |
| DdeI | CTNAG | 2 cut(s) | 258, 669 |
| DraIII | CACNNNGTG | 1 cut(s) | 841 |
| DriI | GACNNNNNGTC | 2 cut(s) | 91, 183 |
| EaeI | YGGCCR | 2 cut(s) | 237, 286 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 91, 183 |
| EcoRII | CCWGG | 1 cut(s) | 371 |
| FaeI | CATG | 8 cut(s) | 444, 604, 632, 798, 818, 860, 1007, 1151 |
| FatI | CATG | 8 cut(s) | 440, 600, 628, 794, 814, 856, 1003, 1147 |
| FauI | CCCGC | 2 cut(s) | 16, 21 |
| FauNDI | CATATG | 1 cut(s) | 1182 |
| FbaI | TGATCA | 3 cut(s) | 811, 910, 1066 |
| Fnu4HI | GCNGC | 8 cut(s) | 62, 115, 134, 298, 301, 381, 480, 1123 |
| FokI | GGATG | 3 cut(s) | 296, 788, 1074 |
| Fsp4HI | GCNGC | 8 cut(s) | 62, 115, 134, 298, 301, 381, 480, 1123 |
| FspBI | CTAG | 3 cut(s) | 852, 894, 1077 |
| GlaI | GCGC | 5 cut(s) | 274, 276, 367, 718, 980 |
| GluI | GCNGC | 8 cut(s) | 62, 115, 134, 298, 301, 381, 480, 1123 |
| GsaI | CCCAGC | 1 cut(s) | 267 |
| GsuI | CTGGAG | 3 cut(s) | 28, 109, 371 |
| HaeII | RGCGCY | 1 cut(s) | 720 |
| HaeIII | GGCC | 7 cut(s) | 239, 288, 341, 356, 398, 403, 430 |
| HapII | CCGG | 7 cut(s) | 164, 183, 240, 357, 399, 404, 431 |
| HhaI | GCGC | 5 cut(s) | 275, 277, 368, 719, 981 |
| Hin1II | CATG | 8 cut(s) | 444, 604, 632, 798, 818, 860, 1007, 1151 |
| Hin6I | GCGC | 5 cut(s) | 273, 275, 366, 717, 979 |
| HinP1I | GCGC | 5 cut(s) | 273, 275, 366, 717, 979 |
| HinfI | GANTC | 5 cut(s) | 121, 458, 783, 956, 998 |
| HpaII | CCGG | 7 cut(s) | 164, 183, 240, 357, 399, 404, 431 |
| HphI | GGTGA | 5 cut(s) | 322, 371, 445, 755, 811 |
| Hpy166II | GTNNAC | 1 cut(s) | 85 |
| Hpy188I | TCNGA | 3 cut(s) | 177, 928, 1195 |
| Hpy8I | GTNNAC | 1 cut(s) | 85 |
| Hpy99I | CGWCG | 2 cut(s) | 44, 82 |
| HpyAV | CCTTC | 3 cut(s) | 244, 356, 794 |
| HpyCH4III | ACNGT | 3 cut(s) | 69, 82, 649 |
| HpyCH4IV | ACGT | 1 cut(s) | 39 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 274, 294, 338, 723, 978 |
| HpyF3I | CTNAG | 2 cut(s) | 258, 669 |
| HpySE526I | ACGT | 1 cut(s) | 39 |
| Hsp92II | CATG | 8 cut(s) | 444, 604, 632, 798, 818, 860, 1007, 1151 |
| HspAI | GCGC | 5 cut(s) | 273, 275, 366, 717, 979 |
| Ksp22I | TGATCA | 3 cut(s) | 811, 910, 1066 |
| LmnI | GCTCC | 2 cut(s) | 74, 254 |
| Lsp1109I | GCAGC | 8 cut(s) | 48, 120, 126, 284, 287, 367, 491, 1134 |
| LweI | GCATC | 2 cut(s) | 303, 1021 |
| MabI | ACCWGGT | 1 cut(s) | 371 |
| MaeI | CTAG | 3 cut(s) | 852, 894, 1077 |
| MaeII | ACGT | 1 cut(s) | 39 |
| MaeIII | GTNAC | 2 cut(s) | 35, 817 |
| MboII | GAAGA | 5 cut(s) | 515, 759, 842, 883, 927 |
| MfeI | CAATTG | 2 cut(s) | 229, 939 |
| MflI | RGATCY | 4 cut(s) | 98, 157, 987, 1134 |
| MhlI | GDGCHC | 2 cut(s) | 209, 865 |
| MluCI | AATT | 7 cut(s) | 229, 695, 788, 805, 939, 1019, 1162 |
| MlyI | GAGTC | 1 cut(s) | 950 |
| MroXI | GAANNNNTTC | 1 cut(s) | 457 |
| MseI | TTAA | 2 cut(s) | 465, 947 |
| MspA1I | CMGCKG | 1 cut(s) | 482 |
| MspCI | CTTAAG | 1 cut(s) | 946 |
| MspI | CCGG | 7 cut(s) | 164, 183, 240, 357, 399, 404, 431 |
| MspR9I | CCNGG | 2 cut(s) | 373, 400 |
| MunI | CAATTG | 2 cut(s) | 229, 939 |
| MvaI | CCWGG | 1 cut(s) | 373 |
| MvnI | CGCG | 3 cut(s) | 275, 277, 368 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 274, 294, 338, 723, 978 |
| NciI | CCSGG | 1 cut(s) | 400 |
| NdeI | CATATG | 1 cut(s) | 1182 |
| NlaIII | CATG | 8 cut(s) | 444, 604, 632, 798, 818, 860, 1007, 1151 |
| NmuCI | GTSAC | 1 cut(s) | 817 |
| NspI | RCATGY | 2 cut(s) | 604, 798 |
| PagI | TCATGA | 1 cut(s) | 1003 |
| PaqCI | CACCTGC | 1 cut(s) | 323 |
| PauI | GCGCGC | 1 cut(s) | 273 |
| PciI | ACATGT | 1 cut(s) | 794 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PdmI | GAANNNNTTC | 1 cut(s) | 457 |
| PfeI | GAWTC | 4 cut(s) | 121, 458, 783, 998 |
| PflFI | GACNNNGTC | 1 cut(s) | 373 |
| PkrI | GCNGC | 8 cut(s) | 63, 116, 135, 299, 302, 382, 481, 1124 |
| Ple19I | CGATCG | 3 cut(s) | 52, 128, 140 |
| PleI | GAGTC | 1 cut(s) | 950 |
| PpsI | GAGTC | 1 cut(s) | 950 |
| PscI | ACATGT | 1 cut(s) | 794 |
| Psp6I | CCWGG | 1 cut(s) | 371 |
| PspFI | CCCAGC | 1 cut(s) | 263 |
| PspGI | CCWGG | 1 cut(s) | 371 |
| PspPI | GGNCC | 1 cut(s) | 401 |
| PstI | CTGCAG | 2 cut(s) | 418, 613 |
| PsuI | RGATCY | 4 cut(s) | 98, 157, 987, 1134 |
| PsyI | GACNNNGTC | 1 cut(s) | 373 |
| PteI | GCGCGC | 1 cut(s) | 273 |
| PvuI | CGATCG | 3 cut(s) | 52, 128, 140 |
| PvuII | CAGCTG | 1 cut(s) | 482 |
| RsaI | GTAC | 1 cut(s) | 545 |
| RsaNI | GTAC | 1 cut(s) | 544 |
| SaqAI | TTAA | 2 cut(s) | 465, 947 |
| SatI | GCNGC | 8 cut(s) | 62, 115, 134, 298, 301, 381, 480, 1123 |
| Sau96I | GGNCC | 1 cut(s) | 401 |
| SchI | GAGTC | 1 cut(s) | 950 |
| ScrFI | CCNGG | 2 cut(s) | 373, 400 |
| SduI | GDGCHC | 2 cut(s) | 209, 865 |
| SexAI | ACCWGGT | 1 cut(s) | 371 |
| SfaNI | GCATC | 2 cut(s) | 303, 1021 |
| SfcI | CTRYAG | 3 cut(s) | 414, 609, 633 |
| SmlI | CTYRAG | 2 cut(s) | 864, 946 |
| SmoI | CTYRAG | 2 cut(s) | 864, 946 |
| Sse9I | AATT | 7 cut(s) | 229, 695, 788, 805, 939, 1019, 1162 |
| SsiI | CCGC | 6 cut(s) | 23, 28, 202, 277, 511, 726 |
| SspMI | CTAG | 3 cut(s) | 852, 894, 1077 |
| StyD4I | CCNGG | 2 cut(s) | 371, 398 |
| TaaI | ACNGT | 3 cut(s) | 69, 82, 649 |
| TaiI | ACGT | 1 cut(s) | 42 |
| TaqI | TCGA | 2 cut(s) | 124, 710 |
| TasI | AATT | 7 cut(s) | 229, 695, 788, 805, 939, 1019, 1162 |
| TatI | WGTACW | 1 cut(s) | 543 |
| TfiI | GAWTC | 4 cut(s) | 121, 458, 783, 998 |
| Tru1I | TTAA | 2 cut(s) | 465, 947 |
| Tru9I | TTAA | 2 cut(s) | 465, 947 |
| TscAI | CASTG | 2 cut(s) | 74, 988 |
| TseFI | GTSAC | 1 cut(s) | 817 |
| TseI | GCWGC | 8 cut(s) | 61, 114, 133, 297, 300, 380, 479, 1122 |
| Tsp45I | GTSAC | 1 cut(s) | 817 |
| TspDTI | ATGAA | 7 cut(s) | 768, 843, 1011, 1020, 1076, 1142, 1198 |
| TspGWI | ACGGA | 2 cut(s) | 852, 1068 |
| TspRI | CASTG | 2 cut(s) | 74, 988 |
| Tth111I | GACNNNGTC | 1 cut(s) | 373 |
| Vha464I | CTTAAG | 1 cut(s) | 946 |
| XceI | RCATGY | 2 cut(s) | 604, 798 |
| XmnI | GAANNNNTTC | 1 cut(s) | 457 |
| XspI | CTAG | 3 cut(s) | 852, 894, 1077 |