Rh2DG253700

Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
26485286 .. 26485802
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG253700.1

Sequence Viewer

Length: 372 bp
ATGTCAAATTTATATATTATTTTATTATTTTACTTTTTCAGATATTATATAAAATATAATAAAACCAACTTTCTCTTTCTTCTCTATCTCTTTTCTTCTGTATCTCTTGTCTTCAAGAAGCCATGGAAAGAGAGCAGCAATAGGAGTTGTGGTTTCTTCCGATCTCTCATCTTCTCTCTATCTCTCTCCCGTTTCGCTCTGTGGTTTCAGTTACAGTCAAATCCATGGCGACCCAAGGTCAAGTCATCACCTACAAAGCGGCGGTGGCCTGGGAACGTACCCAACAATCCTTTGGTTATCGAAGACGTCCAGGTGGCTCCGCCGCAGGCCGGAGAGGTTCGCGTCAAGATTATCTACACCGCTCTCTCTTGA

Protein Analysis

123

Amino Acids

14.56

Weight (kDa)

10.33

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 362
AccII CGCG 1 cut(s) 342
AciI CCGC 5 cut(s) 259, 262, 320, 323, 360
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 115
AhdI GACNNNNNGTC 1 cut(s) 236
AjnI CCWGG 2 cut(s) 268, 309
AoxI GGCC 2 cut(s) 266, 327
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 240
BbsI GAAGAC 2 cut(s) 103, 309
BbvI GCAGC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 270, 311
BisI GCNGC 3 cut(s) 136, 260, 323
BlsI GCNGC 3 cut(s) 137, 261, 324
Bme1390I CCNGG 2 cut(s) 270, 311
BmeRI GACNNNNNGTC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 2 cut(s) 270, 311
BpiI GAAGAC 2 cut(s) 103, 309
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 4 cut(s) 122, 224, 234, 269
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 329
BseBI CCWGG 2 cut(s) 270, 311
BseDI CCNNGG 4 cut(s) 122, 224, 234, 269
BseLI CCNNNNNNNGG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 2 cut(s) 268, 329
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 329
BsnI GGCC 2 cut(s) 268, 329
Bsp143I GATC 1 cut(s) 161
Bsp19I CCATGG 2 cut(s) 122, 224
BspACI CCGC 5 cut(s) 259, 262, 320, 323, 360
BspANI GGCC 2 cut(s) 268, 329
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 362
BssECI CCNNGG 4 cut(s) 122, 224, 234, 269
BssMI GATC 1 cut(s) 161
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 3 cut(s) 122, 224, 234
Bst2UI CCWGG 2 cut(s) 270, 311
Bst4CI ACNGT 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 327
BstDSI CCRYGG 2 cut(s) 122, 224
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 2 cut(s) 270, 311
BstSCI CCNGG 2 cut(s) 268, 309
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 103, 309
BsuRI GGCC 2 cut(s) 268, 329
BtgI CCRYGG 2 cut(s) 122, 224
Cac8I GCNNGC 1 cut(s) 327
CseI GACGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 278
CviAII CATG 2 cut(s) 123, 225
CviJI RGCY 4 cut(s) 121, 268, 317, 329
CviKI_1 RGCY 4 cut(s) 121, 268, 317, 329
CviQI GTAC 1 cut(s) 278
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
DriI GACNNNNNGTC 1 cut(s) 236
Eam1105I GACNNNNNGTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 309
Eco130I CCWWGG 3 cut(s) 122, 224, 234
EcoRII CCWGG 2 cut(s) 268, 309
EcoT14I CCWWGG 3 cut(s) 122, 224, 234
ErhI CCWWGG 3 cut(s) 122, 224, 234
FaeI CATG 2 cut(s) 126, 228
FaiI YATR 7 cut(s) 13, 15, 48, 50, 57, 124, 226
FatI CATG 2 cut(s) 122, 224
Fnu4HI GCNGC 3 cut(s) 136, 260, 323
Fsp4HI GCNGC 3 cut(s) 136, 260, 323
GluI GCNGC 3 cut(s) 136, 260, 323
HaeIII GGCC 2 cut(s) 268, 329
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 2 cut(s) 126, 228
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 41, 161
Hpy188III TCNNGA 3 cut(s) 115, 346, 369
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 2 cut(s) 276, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpySE526I ACGT 2 cut(s) 276, 306
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 2 cut(s) 126, 228
Kzo9I GATC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 6 cut(s) 255, 282, 296, 311, 323, 343
Lsp1109I GCAGC 1 cut(s) 147
MaeII ACGT 2 cut(s) 276, 306
MaeIII GTNAC 1 cut(s) 210
MalI GATC 1 cut(s) 163
MbiI CCGCTC 1 cut(s) 362
MboI GATC 1 cut(s) 161
MboII GAAGA 6 cut(s) 71, 87, 103, 148, 163, 314
MluCI AATT 1 cut(s) 7
MnlI CCTC 1 cut(s) 328
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 2 cut(s) 270, 311
MvaI CCWGG 2 cut(s) 270, 311
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 265
NcoI CCATGG 2 cut(s) 122, 224
NdeII GATC 1 cut(s) 161
NlaIII CATG 2 cut(s) 126, 228
NlaIV GGNNCC 1 cut(s) 318
PkrI GCNGC 3 cut(s) 137, 261, 324
Psp6I CCWGG 2 cut(s) 268, 309
PspGI CCWGG 2 cut(s) 268, 309
PspN4I GGNNCC 1 cut(s) 318
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SatI GCNGC 3 cut(s) 136, 260, 323
Sau3AI GATC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 270, 311
SetI ASST 6 cut(s) 240, 253, 279, 309, 315, 339
Sse9I AATT 1 cut(s) 7
SsiI CCGC 5 cut(s) 259, 262, 320, 323, 360
StyD4I CCNGG 2 cut(s) 268, 309
StyI CCWWGG 3 cut(s) 122, 224, 234
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 2 cut(s) 279, 309
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 7
TauI GCSGC 2 cut(s) 262, 325
TseI GCWGC 1 cut(s) 135
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.