Rmu_sc0004657.1_g000053

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004657.1
OG0000220
Physical Location & Seq
Reverse (-)
254206 .. 254709
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004657.1_g000053.1.cds

Sequence Viewer

Length: 504 bp
atgtcaatgggaagcctcaaggagaagcttggtcgattatgtgggaagtttttcatatataccaatgtccctgcgtacaaagcggaatctcatgagtacaaaaacatgataattggagcaaaagagtgtccaaatgttcctccgccaagttcgtttcagataatgaacaaatatttggccatggaacataaggaaataactgaatatataaatagccaaagaaaaatgtggaaaacatatggctgcaccataatggctgatgggtggtccggtccaacaagaatgcaagttatcaacttcatggtttactgtaagggtaagactgtgtttttaaagtctgtcaatgcatcaagtgatataagggagcaccaataccttgccaagctatttaaagatgtcattgatgaagtggggaaggagaatgtggttcaagtatgtaccgataatggctcagcatttgtgaaggctggtaaaacattatcggaacgttataacttctattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

167

Amino Acids

19.1

Weight (kDa)

9.11

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AciI CCGC 2 cut(s) 83, 143
AclI AACGTT 1 cut(s) 487
AcoI YGGCCR 1 cut(s) 177
AfaI GTAC 3 cut(s) 77, 98, 439
AgsI TTSAA 1 cut(s) 431
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 2 cut(s) 28, 385
AluI AGCT 2 cut(s) 28, 385
Alw21I GWGCWC 1 cut(s) 369
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 267, 272
AvaII GGWCC 2 cut(s) 267, 272
BalI TGGCCA 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 254
BisI GCNGC 1 cut(s) 244
BlpI GCTNAGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 267, 272
BmgT120I GGNCC 2 cut(s) 267, 272
BmsI GCATC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 369
Bsp1720I GCTNAGC 1 cut(s) 451
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 83, 143
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 464
BspHI TCATGA 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 311, 325
BstDEI CTNAG 1 cut(s) 451
BstDSI CCRYGG 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 180
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 267, 272
Csp6I GTAC 3 cut(s) 76, 97, 438
CviAII CATG 4 cut(s) 92, 106, 181, 301
CviJI RGCY 9 cut(s) 15, 28, 179, 216, 243, 257, 385, 450, 467
CviKI_1 RGCY 9 cut(s) 15, 28, 179, 216, 243, 257, 385, 450, 467
CviQI GTAC 3 cut(s) 76, 97, 438
DdeI CTNAG 1 cut(s) 451
DraI TTTAAA 2 cut(s) 333, 391
EaeI YGGCCR 1 cut(s) 177
EciI GGCGGA 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 267, 272
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 4 cut(s) 95, 109, 184, 304
FaqI GGGAC 1 cut(s) 53
FatI CATG 4 cut(s) 91, 105, 180, 300
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 270
Hin1II CATG 4 cut(s) 95, 109, 184, 304
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 159, 484
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 409, 457
HpyCH4III ACNGT 2 cut(s) 311, 325
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 246, 286, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 451
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 4 cut(s) 95, 109, 184, 304
LmnI GCTCC 2 cut(s) 116, 364
LpnPI CCDG 3 cut(s) 84, 283, 453
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 356
MaeII ACGT 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 2 cut(s) 26, 150
Mox20I TGGCCA 1 cut(s) 179
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 50
MscI TGGCCA 1 cut(s) 179
MseI TTAA 2 cut(s) 332, 390
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 238
NlaIII CATG 4 cut(s) 95, 109, 184, 304
NsiI ATGCAT 1 cut(s) 349
PagI TCATGA 1 cut(s) 91
PctI GAATGC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 245
PsiI TTATAA 1 cut(s) 492
Psp1406I AACGTT 1 cut(s) 487
PspPI GGNCC 2 cut(s) 267, 272
RsaI GTAC 3 cut(s) 77, 98, 439
RsaNI GTAC 3 cut(s) 76, 97, 438
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 2 cut(s) 332, 390
SatI GCNGC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 267, 272
SduI GDGCHC 1 cut(s) 369
SetI ASST 4 cut(s) 30, 378, 387, 490
SfaNI GCATC 1 cut(s) 356
SinI GGWCC 2 cut(s) 267, 272
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 1 cut(s) 111
SsiI CCGC 2 cut(s) 83, 143
SspI AATATT 1 cut(s) 173
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 311, 325
TaiI ACGT 1 cut(s) 490
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 332, 390
Tru9I TTAA 2 cut(s) 332, 390
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 4 cut(s) 43, 179, 289, 420
VpaK11BI GGWCC 2 cut(s) 267, 272
XmnI GAANNNNTTC 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.