Rroxscaffold_6G00404480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000220
Physical Location & Seq
Reverse (-)
26996409 .. 26997513
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404480.1

Sequence Viewer

Length: 357 bp
ATGACTCTCTGTAAAGAGGACTATCGTCCGTTCCTCTCTTCGGTGAGCGGCGTTGACAAATTTACTAGCCTGGTCTGTTTTTCATATTGCGGTGGCAACAAAATTATTCGCCTGTCTCCCTCTTTGGGTGGAGGAGGCGCTTCTATTGATGTTGGTAGGGATGGGGTGCTGGCTGATTGGATCTGGTTTGGTGGAGATCCATATGGCAGTGGTGTTGGAGCGACCCTCAATCCGGCGATCTGGGTCTGGGAAGGCTGTGATAGAGATCGGGGGTCCGATCTAAGATTGGGTAATTTTCAAGTCGTGAAGACCAGAGGGCCAGAGTTTGTGGTGGGGACGCCGCCGGTTCAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.56

Weight (kDa)

5.22

Isoelectric Point (pI)

21.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 48
AciI CCGC 3 cut(s) 48, 90, 341
AclWI GGATC 2 cut(s) 188, 191
AcsI RAATTY 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 338
AfiI CCNNNNNNNGG 4 cut(s) 40, 125, 232, 350
AgsI TTSAA 2 cut(s) 299, 350
AjnI CCWGG 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 188, 191
AoxI GGCC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 273, 317
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 314
BccI CCATC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 2 cut(s) 49, 341
BlsI GCNGC 2 cut(s) 50, 342
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 273, 317
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 71
BoxI GACNNNNGTC 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BsaBI GATNNNNATC 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 125, 232, 350
Bse118I RCCGGY 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 4 cut(s) 40, 125, 232, 350
BseRI GAGGAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 233, 344
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 4 cut(s) 40, 125, 232, 350
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 5 cut(s) 180, 196, 237, 265, 277
BspACI CCGC 3 cut(s) 48, 90, 341
BspANI GGCC 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 2 cut(s) 188, 191
BsrBI CCGCTC 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 5 cut(s) 180, 196, 237, 265, 277
BssNI GRCGYC 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 166
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 5 cut(s) 183, 199, 240, 268, 280
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 5 cut(s) 180, 196, 237, 265, 277
BstNI CCWGG 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 2 cut(s) 180, 196
BstYI RGATCY 2 cut(s) 180, 196
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 273, 317
CseI GACGC 1 cut(s) 346
CviJI RGCY 4 cut(s) 69, 173, 255, 319
CviKI_1 RGCY 4 cut(s) 69, 173, 255, 319
DdeI CTNAG 1 cut(s) 281
DpnI GATC 5 cut(s) 182, 198, 239, 267, 279
DpnII GATC 5 cut(s) 180, 196, 237, 265, 277
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 69
FaiI YATR 3 cut(s) 85, 202, 204
FaqI GGGAC 1 cut(s) 349
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 49, 341
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 49, 341
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 49, 341
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 233, 344
HgaI GACGC 1 cut(s) 346
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 338
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 233, 344
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 338
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 5 cut(s) 180, 196, 237, 265, 277
LmnI GCTCC 1 cut(s) 218
MaeI CTAG 1 cut(s) 66
MalI GATC 5 cut(s) 182, 198, 239, 267, 279
MbiI CCGCTC 1 cut(s) 48
MboI GATC 5 cut(s) 180, 196, 237, 265, 277
MboII GAAGA 2 cut(s) 30, 319
MflI RGATCY 2 cut(s) 180, 196
MluCI AATT 3 cut(s) 59, 102, 292
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 7 cut(s) 10, 44, 125, 128, 130, 236, 308
MspI CCGG 2 cut(s) 233, 344
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 202
NdeII GATC 5 cut(s) 180, 196, 237, 265, 277
NlaIV GGNNCC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 50, 342
PshAI GACNNNNGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 273, 317
PsuI RGATCY 2 cut(s) 180, 196
SatI GCNGC 2 cut(s) 49, 341
Sau3AI GATC 5 cut(s) 180, 196, 237, 265, 277
Sau96I GGNCC 2 cut(s) 273, 317
ScrFI CCNGG 1 cut(s) 71
SinI GGWCC 1 cut(s) 273
Sse9I AATT 3 cut(s) 59, 102, 292
SsiI CCGC 3 cut(s) 48, 90, 341
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 69
TasI AATT 3 cut(s) 59, 102, 292
TauI GCSGC 2 cut(s) 51, 343
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 18
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 59
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.