Rmu_sc0010800.1_g000007

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010800.1
OG0000220
Physical Location & Seq
Forward (+)
57559 .. 58737
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010800.1_g000007.1.cds

Sequence Viewer

Length: 594 bp
atgtcaaggcatgaagatgattctttatctcccacttttgactcatttggtgtgggaggaagcaattatggaccttactcttatgggcaaaacttggcaatgccttacccagcatacatgatgccttatgggatgcaatcaagtgacaactcatggacacaatctgaaggacaatcttcaaatgattatggttatggccaaagtcaagcaatgcatgatccctactataactaccagcaccaaaacccgcagctgatccccctggacccatatggttggcatgtaagtcaatacatgcaaaactacaaaggggaggtatcatttaatgactattcttcacaatacactcaagactctacatatagagatgatgaagatagtgaagattttgtacctcatagcggcaataaacctattcgtttgtctctctcttcgggtggaggaggcatttttgctgatgttggtagagatggagtgctggtcaatcggatctggcttaggggagttccacttggcaatgatggtggatctgctcgcgaatggatgacttgtgtttgtgatggctgtggtagagatcgggggactgatatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

197

Amino Acids

22.0

Weight (kDa)

4.4

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 537
AciI CCGC 2 cut(s) 248, 402
AclWI GGATC 4 cut(s) 212, 250, 497, 535
AcoI YGGCCR 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 180
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 4 cut(s) 212, 250, 497, 535
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 71, 265
AvaII GGWCC 2 cut(s) 71, 265
BalI TGGCCA 1 cut(s) 198
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BbvI GCAGC 1 cut(s) 262
BccI CCATC 3 cut(s) 464, 515, 554
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 429
BisI GCNGC 2 cut(s) 251, 403
BlsI GCNGC 2 cut(s) 252, 404
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 2 cut(s) 71, 265
BmgT120I GGNCC 2 cut(s) 71, 265
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 111, 123
Bpu10I CCTNAGC 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse3DI GCAATG 3 cut(s) 105, 216, 523
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 138, 549
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 3 cut(s) 105, 216, 523
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 429
BsnI GGCC 1 cut(s) 198
Bsp143I GATC 5 cut(s) 217, 255, 489, 527, 574
Bsp68I TCGCGA 1 cut(s) 537
BspACI CCGC 2 cut(s) 248, 402
BspANI GGCC 1 cut(s) 198
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 4 cut(s) 212, 250, 497, 535
BsrDI GCAATG 3 cut(s) 105, 216, 523
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 5 cut(s) 217, 255, 489, 527, 574
Bst2UI CCWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 138, 549
BstFNI CGCG 1 cut(s) 537
BstKTI GATC 5 cut(s) 220, 258, 492, 530, 577
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 5 cut(s) 217, 255, 489, 527, 574
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 2 cut(s) 284, 298
BstSCI CCNGG 1 cut(s) 261
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 2 cut(s) 489, 527
BstXI CCANNNNNNTGG 1 cut(s) 276
BstYI RGATCY 2 cut(s) 489, 527
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 2 cut(s) 138, 549
BtuMI TCGCGA 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 535
Cfr13I GGNCC 2 cut(s) 71, 265
Csp6I GTAC 1 cut(s) 392
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 6 cut(s) 11, 118, 153, 215, 281, 295
CviJI RGCY 4 cut(s) 198, 253, 496, 564
CviKI_1 RGCY 4 cut(s) 198, 253, 496, 564
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 1 cut(s) 497
DpnI GATC 5 cut(s) 219, 257, 491, 529, 576
DpnII GATC 5 cut(s) 217, 255, 489, 527, 574
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 71, 265
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 216
FaeI CATG 6 cut(s) 14, 121, 156, 218, 284, 298
FatI CATG 6 cut(s) 10, 117, 152, 214, 280, 294
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 251, 403
FokI GGATG 2 cut(s) 145, 556
Fsp4HI GCNGC 2 cut(s) 251, 403
GluI GCNGC 2 cut(s) 251, 403
GsaI CCCAGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 198
Hin1II CATG 6 cut(s) 14, 121, 156, 218, 284, 298
HinfI GANTC 3 cut(s) 20, 41, 353
Hpy188I TCNGA 2 cut(s) 166, 489
Hpy188III TCNNGA 2 cut(s) 350, 536
HpyAV CCTTC 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 136, 214, 298
HpyF3I CTNAG 1 cut(s) 497
Hsp92II CATG 6 cut(s) 14, 121, 156, 218, 284, 298
Kzo9I GATC 5 cut(s) 217, 255, 489, 527, 574
LpnPI CCDG 6 cut(s) 123, 248, 248, 275, 464, 478
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 2 cut(s) 111, 123
MaeIII GTNAC 1 cut(s) 143
MalI GATC 5 cut(s) 219, 257, 491, 529, 576
MboI GATC 5 cut(s) 217, 255, 489, 527, 574
MboII GAAGA 6 cut(s) 26, 168, 327, 386, 395, 423
MflI RGATCY 2 cut(s) 489, 527
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 1 cut(s) 64
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 2 cut(s) 35, 347
MnlI CCTC 5 cut(s) 50, 307, 405, 434, 437
Mox20I TGGCCA 1 cut(s) 198
Mph1103I ATGCAT 1 cut(s) 216
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 537
NdeI CATATG 1 cut(s) 271
NdeII GATC 5 cut(s) 217, 255, 489, 527, 574
NlaIII CATG 6 cut(s) 14, 121, 156, 218, 284, 298
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 143
NruI TCGCGA 1 cut(s) 537
NsiI ATGCAT 1 cut(s) 216
NspI RCATGY 2 cut(s) 284, 298
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 252, 404
PleI GAGTC 2 cut(s) 35, 347
PpsI GAGTC 2 cut(s) 35, 347
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 71, 265
PsuI RGATCY 2 cut(s) 489, 527
PvuII CAGCTG 1 cut(s) 253
RruI TCGCGA 1 cut(s) 537
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 251, 403
Sau3AI GATC 5 cut(s) 217, 255, 489, 527, 574
Sau96I GGNCC 2 cut(s) 71, 265
SchI GAGTC 2 cut(s) 35, 347
ScrFI CCNGG 1 cut(s) 263
SetI ASST 5 cut(s) 76, 255, 318, 397, 415
SfaNI GCATC 2 cut(s) 111, 123
SinI GGWCC 2 cut(s) 71, 265
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 1 cut(s) 64
SsiI CCGC 2 cut(s) 248, 402
StyD4I CCNGG 1 cut(s) 261
TasI AATT 1 cut(s) 64
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 27, 387
VpaK11BI GGWCC 2 cut(s) 71, 265
XceI RCATGY 2 cut(s) 284, 298
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.