Rmu_ssc0000372.1_g000050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
OG0000220
Physical Location & Seq
Reverse (-)
180292 .. 180765
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000050.1.cds

Sequence Viewer

Length: 474 bp
atgatccagcatggaaatggtacaacatgtatattttgttttgccaattttaaaagtggaggaattacaagattgaagagtcatttatcaggttatgatcctcacaagagtgtaaagaaatgtgataaggtgccaccggagatcaaaacagaggtgatagcatggataaagagaaaagaatctattaagcaagaaaaggcagctgttcaagatgatattagagaagaatttcgcaatgattatcttggcaatcaaacaagtctgtacaatgatgacgacgacaatgctaatgataatggatttcagtatccaccaggcatgcaccctacagaacaacaagattattgtgctgcagtaagacgatcaaccgtagatcgtgataagaactctcagtttagtagaagtgtaagatttcaatttccaaaacaatcgagaggcggtagtagcagtcaacaaccgcaacaagttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

157

Amino Acids

17.91

Weight (kDa)

8.32

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AciI CCGC 2 cut(s) 438, 458
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 2 cut(s) 22, 266
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 3 cut(s) 76, 209, 416
AjnI CCWGG 1 cut(s) 313
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 200, 350
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 166
BanI GGYRCC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 212, 337
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 327, 351
BfuI GTATCC 1 cut(s) 318
BisI GCNGC 2 cut(s) 201, 351
BlsI GCNGC 2 cut(s) 202, 352
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 315
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 404
BseXI GCAGC 2 cut(s) 212, 337
BshNI GGYRCC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 5 cut(s) 3, 97, 141, 362, 373
BspACI CCGC 2 cut(s) 438, 458
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 264
BssMI GATC 5 cut(s) 3, 97, 141, 362, 373
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 390
BstKTI GATC 5 cut(s) 6, 100, 144, 365, 376
BstMBI GATC 5 cut(s) 3, 97, 141, 362, 373
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 2 cut(s) 30, 322
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 327, 351
BstV1I GCAGC 2 cut(s) 212, 337
BsuI GTATCC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 21, 265
CviAII CATG 4 cut(s) 11, 27, 162, 319
CviJI RGCY 1 cut(s) 203
CviKI_1 RGCY 1 cut(s) 203
CviQI GTAC 2 cut(s) 21, 265
DdeI CTNAG 1 cut(s) 390
DpnI GATC 5 cut(s) 5, 99, 143, 364, 375
DpnII GATC 5 cut(s) 3, 97, 141, 362, 373
DraI TTTAAA 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 4 cut(s) 14, 30, 165, 322
FaiI YATR 6 cut(s) 12, 28, 32, 96, 163, 320
FatI CATG 4 cut(s) 10, 26, 161, 318
Fnu4HI GCNGC 2 cut(s) 201, 351
Fsp4HI GCNGC 2 cut(s) 201, 351
GluI GCNGC 2 cut(s) 201, 351
HapII CCGG 1 cut(s) 137
Hin1II CATG 4 cut(s) 14, 30, 165, 322
HincII GTYRAC 1 cut(s) 452
HindII GTYRAC 1 cut(s) 452
HinfI GANTC 2 cut(s) 79, 179
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 452
Hpy188III TCNNGA 3 cut(s) 209, 377, 432
Hpy8I GTNNAC 1 cut(s) 452
Hpy99I CGWCG 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 2 cut(s) 322, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 4 cut(s) 14, 30, 165, 322
Kzo9I GATC 5 cut(s) 3, 97, 141, 362, 373
LpnPI CCDG 5 cut(s) 20, 75, 150, 300, 327
Lsp1109I GCAGC 2 cut(s) 212, 337
MalI GATC 5 cut(s) 5, 99, 143, 364, 375
MboI GATC 5 cut(s) 3, 97, 141, 362, 373
MboII GAAGA 2 cut(s) 88, 236
MluCI AATT 4 cut(s) 46, 63, 227, 416
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 4 cut(s) 53, 111, 145, 428
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 51, 186
MslI CAYNNNNRTG 2 cut(s) 15, 108
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 444
NdeII GATC 5 cut(s) 3, 97, 141, 362, 373
NlaIII CATG 4 cut(s) 14, 30, 165, 322
NlaIV GGNNCC 1 cut(s) 132
NspI RCATGY 2 cut(s) 30, 322
OliI CACNNNNGTG 1 cut(s) 108
PaeI GCATGC 1 cut(s) 322
PciI ACATGT 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 202, 352
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PscI ACATGT 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 22, 266
RsaNI GTAC 2 cut(s) 21, 265
RseI CAYNNNNRTG 2 cut(s) 15, 108
SaqAI TTAA 2 cut(s) 51, 186
SatI GCNGC 2 cut(s) 201, 351
Sau3AI GATC 5 cut(s) 3, 97, 141, 362, 373
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 315
SetI ASST 4 cut(s) 94, 132, 156, 205
SfcI CTRYAG 2 cut(s) 327, 351
SmiMI CAYNNNNRTG 2 cut(s) 15, 108
SphI GCATGC 1 cut(s) 322
Sse9I AATT 4 cut(s) 46, 63, 227, 416
SsiI CCGC 2 cut(s) 438, 458
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 1 cut(s) 431
TasI AATT 4 cut(s) 46, 63, 227, 416
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 51, 186
Tru9I TTAA 2 cut(s) 51, 186
TseI GCWGC 2 cut(s) 200, 350
XapI RAATTY 1 cut(s) 227
XceI RCATGY 2 cut(s) 30, 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.