RchiOBHm_Chr7g0216171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000220
Physical Location & Seq
Reverse (-)
33791068 .. 33792568
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19342

Sequence Viewer

Length: 684 bp
ATGAGGAGCATCACGAAGGGAGATTTGATTCGACCGGGTAAAACTCGATTTGCTACAAATCACATTGCCATCGACAGTATTTTGAAGAAGAAATCTGATTTGAGAAAATTGTTTACAAGTAGTGCATGGAATGAGAATGCAGCGAGCAGGACCAGAGATGGCCAAAGGATAGAAAAAAGAGTCCTCGATGGGACATTTTGGGATGGCATGGAAGCAGTCCATAAAATATATAAGTCATTGTATAAGATTCTTCGAATTGTTGACACAGAAATTCAGCCAACCATGCCCATATTATATGATAAGTTTGAAAGAGTGAAACAACAAATATCACAGATGAGAGGAAAGAAATGGGTGCTTAAAATCATCAATGATCGATGGGATAACACATTAAGTCAACCATTGCATGCTGCAGCACATTTCTTAAACCCAAATTTTCATTATCGACATGATGTTGGTTATAGCCCACGTTTCACAAACTCTCTGGCAACAGTTGTCGAACAATTTAACATAAATGGAGAAATTGCGGATACATTTTTGGATGAGAGATGCAAAGGAATCATTTGGGTCAACCATAGCAAGAAAAGCAAGAGAAACCAGAAATACAGGTTTGTGGTATATCCTTATATGTATACATTAAAACACACACATACACACACATATAATTTCTTTAATAGAAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

227

Amino Acids

26.91

Weight (kDa)

10.0

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 629
AciI CCGC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 2 cut(s) 270, 430
AgsI TTSAA 2 cut(s) 85, 308
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 3 cut(s) 140, 407, 410
ApoI RAATTY 2 cut(s) 270, 430
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 36
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 162
BbvI GCAGC 3 cut(s) 152, 394, 422
BccI CCATC 5 cut(s) 77, 152, 182, 197, 369
BciVI GTATCC 1 cut(s) 520
BcnI CCSGG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 3 cut(s) 141, 408, 411
BlsI GCNGC 3 cut(s) 142, 409, 412
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 18, 536
Bpu14I TTCGAA 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 373
Bse3DI GCAATG 2 cut(s) 63, 398
BseCI ATCGAT 1 cut(s) 373
BseGI GGATG 2 cut(s) 208, 544
BseMI GCAATG 2 cut(s) 63, 398
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 3 cut(s) 152, 394, 422
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 1 cut(s) 524
BspANI GGCC 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 412
BspT104I TTCGAA 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 63, 398
BssMI GATC 1 cut(s) 370
BssNAI GTATAC 1 cut(s) 630
Bst1107I GTATAC 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 77, 490
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 145, 405
BstF5I GGATG 2 cut(s) 208, 544
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 2 cut(s) 283, 582
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 152, 394, 422
BstZ17I GTATAC 1 cut(s) 630
Bsu15I ATCGAT 1 cut(s) 373
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 1 cut(s) 162
BsuTUI ATCGAT 1 cut(s) 373
BtsCI GGATG 2 cut(s) 208, 544
Cac8I GCNNGC 2 cut(s) 145, 405
Cfr13I GGNCC 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 373
CviAII CATG 5 cut(s) 126, 208, 283, 404, 446
CviJI RGCY 3 cut(s) 162, 277, 462
CviKI_1 RGCY 3 cut(s) 162, 277, 462
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 150
FaeI CATG 5 cut(s) 129, 211, 286, 407, 449
FaqI GGGAC 1 cut(s) 205
FatI CATG 5 cut(s) 125, 207, 282, 403, 445
FblI GTMKAC 1 cut(s) 629
Fnu4HI GCNGC 3 cut(s) 141, 408, 411
FokI GGATG 2 cut(s) 215, 551
Fsp4HI GCNGC 3 cut(s) 141, 408, 411
GluI GCNGC 3 cut(s) 141, 408, 411
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 35
Hin1II CATG 5 cut(s) 129, 211, 286, 407, 449
HincII GTYRAC 3 cut(s) 262, 395, 568
HindII GTYRAC 3 cut(s) 262, 395, 568
HinfI GANTC 4 cut(s) 28, 180, 247, 555
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 5 cut(s) 114, 262, 395, 568, 630
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 5 cut(s) 114, 262, 395, 568, 630
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 77, 490
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 5 cut(s) 125, 140, 403, 410, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 582
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 5 cut(s) 129, 211, 286, 407, 449
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 6 cut(s) 48, 133, 166, 467, 589, 608
Lsp1109I GCAGC 3 cut(s) 152, 394, 422
LweI GCATC 2 cut(s) 18, 536
MaeII ACGT 1 cut(s) 466
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 3 cut(s) 97, 100, 242
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 7 cut(s) 107, 255, 270, 430, 500, 519, 661
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 2 cut(s) 194, 332
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 6 cut(s) 357, 389, 422, 504, 635, 669
Msp20I TGGCCA 1 cut(s) 162
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 283, 582
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 370
NlaIII CATG 5 cut(s) 129, 211, 286, 407, 449
NspI RCATGY 1 cut(s) 407
NspV TTCGAA 1 cut(s) 253
PaeI GCATGC 1 cut(s) 407
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 3 cut(s) 28, 247, 555
PkrI GCNGC 3 cut(s) 142, 409, 412
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 412
SaqAI TTAA 6 cut(s) 357, 389, 422, 504, 635, 669
SatI GCNGC 3 cut(s) 141, 408, 411
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 36
SetI ASST 2 cut(s) 469, 608
SfaNI GCATC 2 cut(s) 18, 536
SfcI CTRYAG 1 cut(s) 408
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 150
SphI GCATGC 1 cut(s) 407
Sse9I AATT 7 cut(s) 107, 255, 270, 430, 500, 519, 661
SsiI CCGC 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 2 cut(s) 77, 490
TaiI ACGT 1 cut(s) 469
TaqI TCGA 8 cut(s) 31, 46, 72, 186, 253, 373, 442, 495
TasI AATT 7 cut(s) 107, 255, 270, 430, 500, 519, 661
TfiI GAWTC 3 cut(s) 28, 247, 555
Tru1I TTAA 6 cut(s) 357, 389, 422, 504, 635, 669
Tru9I TTAA 6 cut(s) 357, 389, 422, 504, 635, 669
TseI GCWGC 3 cut(s) 140, 407, 410
TspDTI ATGAA 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 2 cut(s) 270, 430
XceI RCATGY 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.