Prupe.1G215800_v2.0.a1

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000220
Physical Location & Seq
Reverse (-)
22873338 .. 22875787
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G215800.1

Sequence Viewer

Length: 1302 bp
ATGGCAAGTAGTAGTGGACTGAGTGGAGCTAGTGTGCCTGGTGGTCTTGATGTAGCATGGAAATATGCTCGTCCAATAGAAGGCAATACGCATGGCACCATATACACATTTTGTGAATCCACATTTAAAAGTGGTGGAATTACACGGTTAAAGTATCATTTGGCCGGATTTGATCCACATAAGAGTGTAAAGAAGTGCAAAGAAGTACCACCAGATACTAAGAATAAGATGAGGATCTTCTATCAAGGAGATTTGGTCCGACCCGGTGCAACTCGATTTGCAACAAACTACATCACCATCAATAACATCTTAAATAAGAAAGCTGGGTTGAGGCAACTTTTTAGAAGTAAGGAATGGTATAATAGTCGATTTAGTGAGTCAGAAGAGGGGAAGATAATTGAAAGTCGAGTCCTTGATCATAGATTATGGGATGCCATGGAAGGAGTGCAATCCATCTATGAGCCTTTATATAGCATCCTGCGAATTATTGACACAGAGACAGCATCATCATCGGCATGTGAGCGAAATTGGAGTACATTTGCTCTTTTTCACATGAAACAAAGGAACCGTCTAGCATATACTAGGCTAGAAAAGATTGTCTTTTGCTATTATAATATGAAACTTAAGCTACATGATGAAGAGGCCGAAATGAACAAGGTTGCAGAAAATGACTACATAGACCTTCTTGACATTGCAAGAGTCATATCCGAAGATGTTAGGAGTGGGGATACTTCATCATTTGAAAAGGATATGCTTGGACCTCGGCAAGGTCAAAGACGTCCCTTGAGAGACGACGCCAATGCTAGTAGAAAGGAAAGTTCATCTAATTCGTCAGATAATGATGGAGGAAGTAATGTGGGATCAGGAGATGAGGATCATGGATGTAGAGAAGCTGGACCCGGCATTGGTGCAATTGGGAAGCAATACTCAAAGAAAAGAAGCCAACCAATCAATCCATCTGAAGAGGACATGGCGATCAGTTTTGGATCTATGAGCATAGGAACTAGACCTAGTACAAACTCAAATGAATCTTATGATGGCTATGGTTATGTCATGTCTAATTATAGTGGAACTAGTTATGGAGCTGAAGATGATGAAACATATTATGGACCCACTAGTTGGGTTAATCCTAACTATCCCATATATAGGAGGACAGTAGGGAGCTCAAGAGAGACATATATGCACCATGTTCAAACATGGCTTACAAACTACTCGGGTTACATGACTTGGTATGACTATTGTATGAATCTAGATGGTTGTTCCTCATTGTTTGAACCTCATAGGAGCTTTTCATTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

434

Amino Acids

49.01

Weight (kDa)

6.39

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AatII GACGTC 1 cut(s) 781
AccB1I GGYRCC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 1119
AclWI GGATC 5 cut(s) 167, 242, 868, 882, 994
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 2 cut(s) 981, 1107
AcyI GRCGYC 2 cut(s) 778, 795
AfaI GTAC 3 cut(s) 207, 535, 1015
AfiI CCNNNNNNNGG 5 cut(s) 80, 767, 905, 1119, 1146
AflII CTTAAG 1 cut(s) 623
AgsI TTSAA 4 cut(s) 401, 743, 1193, 1274
AhlI ACTAGT 2 cut(s) 1073, 1115
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 7 cut(s) 29, 323, 628, 893, 1085, 1164, 1287
AluI AGCT 7 cut(s) 29, 323, 628, 893, 1085, 1164, 1287
Alw21I GWGCWC 1 cut(s) 1166
Alw26I GTCTC 3 cut(s) 491, 783, 1166
AlwI GGATC 5 cut(s) 167, 242, 868, 882, 994
Ama87I CYCGRG 1 cut(s) 1213
AoxI GGCC 2 cut(s) 162, 642
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AspS9I GGNCC 4 cut(s) 256, 758, 896, 1109
AsuC2I CCSGG 2 cut(s) 264, 900
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 1213
AvaII GGWCC 4 cut(s) 256, 758, 896, 1109
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 1166
Bbv12I GWGCWC 1 cut(s) 1166
BccI CCATC 6 cut(s) 305, 461, 836, 964, 1031, 1247
BcgI CGANNNNNNTGC 4 cut(s) 492, 526, 782, 816
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 721
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 2 cut(s) 264, 900
BcoDI GTCTC 3 cut(s) 491, 783, 1166
BcuI ACTAGT 2 cut(s) 1073, 1115
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 721
Bme1390I CCNGG 3 cut(s) 39, 264, 900
Bme18I GGWCC 4 cut(s) 256, 758, 896, 1109
BmeT110I CYCGRG 1 cut(s) 1213
BmgT120I GGNCC 4 cut(s) 256, 758, 896, 1109
BmiI GGNNCC 4 cut(s) 97, 566, 898, 1111
BmrFI CCNGG 3 cut(s) 39, 264, 900
BmsI GCATC 3 cut(s) 421, 483, 512
BpuEI CTTGAG 2 cut(s) 805, 1150
BpuMI CCSGG 2 cut(s) 264, 900
BsaBI GATNNNNATC 2 cut(s) 233, 873
BsaHI GRCGYC 2 cut(s) 778, 795
BsaJI CCNNGG 2 cut(s) 435, 761
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 240, 270
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 767, 905, 1119, 1146
Bse3DI GCAATG 1 cut(s) 690
Bse8I GATNNNNATC 2 cut(s) 233, 873
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 435, 761
BseGI GGATG 3 cut(s) 436, 474, 887
BseJI GATNNNNATC 2 cut(s) 233, 873
BseLI CCNNNNNNNGG 5 cut(s) 80, 767, 905, 1119, 1146
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 11
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 164, 644
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 1166
BsiHKCI CYCGRG 1 cut(s) 1213
BsiSI CCGG 3 cut(s) 165, 264, 900
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 5 cut(s) 80, 767, 905, 1119, 1146
BsmAI GTCTC 3 cut(s) 491, 783, 1166
BsmBI CGTCTC 1 cut(s) 783
BsmFI GGGAC 1 cut(s) 765
BsnI GGCC 2 cut(s) 164, 644
BsoBI CYCGRG 1 cut(s) 1213
Bsp1286I GDGCHC 1 cut(s) 1166
Bsp143I GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
Bsp19I CCATGG 1 cut(s) 435
BspANI GGCC 2 cut(s) 164, 644
BspCNI CTCAG 1 cut(s) 12
BspLI GGNNCC 4 cut(s) 97, 566, 898, 1111
BspPI GGATC 5 cut(s) 167, 242, 868, 882, 994
BspT107I GGYRCC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 690
BssECI CCNNGG 2 cut(s) 435, 761
BssMI GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
BssNI GRCGYC 2 cut(s) 778, 795
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 147, 569, 1156
Bst6I CTCTTC 3 cut(s) 378, 633, 957
BstACI GRCGYC 2 cut(s) 778, 795
BstAFI CTTAAG 1 cut(s) 623
BstDEI CTNAG 2 cut(s) 20, 219
BstDSI CCRYGG 1 cut(s) 435
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 3 cut(s) 436, 474, 887
BstKTI GATC 7 cut(s) 175, 237, 418, 863, 877, 978, 989
BstMAI GTCTC 3 cut(s) 491, 783, 1166
BstMBI GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 3 cut(s) 37, 262, 898
BstX2I RGATCY 2 cut(s) 234, 986
BstYI RGATCY 2 cut(s) 234, 986
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 2 cut(s) 164, 644
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 3 cut(s) 436, 474, 887
Cfr13I GGNCC 4 cut(s) 256, 758, 896, 1109
CseI GACGC 1 cut(s) 803
Csp6I GTAC 3 cut(s) 206, 534, 1014
CviQI GTAC 3 cut(s) 206, 534, 1014
DdeI CTNAG 2 cut(s) 20, 219
DpnI GATC 7 cut(s) 174, 236, 417, 862, 876, 977, 988
DpnII GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
DraI TTTAAA 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 3 cut(s) 378, 633, 957
EarI CTCTTC 3 cut(s) 378, 633, 957
Ecl136II GAGCTC 1 cut(s) 1164
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 1166
Eco47I GGWCC 4 cut(s) 256, 758, 896, 1109
Eco53kI GAGCTC 1 cut(s) 1164
Eco57I CTGAAG 2 cut(s) 981, 1107
Eco88I CYCGRG 1 cut(s) 1213
EcoICRI GAGCTC 1 cut(s) 1164
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 1166
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 783
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FaqI GGGAC 1 cut(s) 765
FbaI TGATCA 1 cut(s) 415
FokI GGATG 3 cut(s) 443, 461, 894
FriOI GRGCYC 1 cut(s) 1166
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 2 cut(s) 164, 644
HapII CCGG 3 cut(s) 165, 264, 900
HgaI GACGC 1 cut(s) 803
Hin1I GRCGYC 2 cut(s) 778, 795
HinfI GANTC 6 cut(s) 116, 377, 408, 699, 1028, 1246
HpaII CCGG 3 cut(s) 165, 264, 900
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 5 cut(s) 260, 382, 709, 835, 961
Hpy188III TCNNGA 5 cut(s) 47, 686, 864, 1167, 1250
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 3 cut(s) 74, 434, 692
HpyCH4III ACNGT 3 cut(s) 147, 569, 1156
HpyCH4IV ACGT 1 cut(s) 778
HpyCH4V TGCA 8 cut(s) 198, 269, 281, 448, 662, 695, 911, 1183
HpyF3I CTNAG 2 cut(s) 20, 219
HpySE526I ACGT 1 cut(s) 778
Hsp92I GRCGYC 2 cut(s) 778, 795
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
LmnI GCTCC 4 cut(s) 26, 1082, 1161, 1284
LweI GCATC 3 cut(s) 421, 483, 512
MaeII ACGT 1 cut(s) 778
MaeIII GTNAC 1 cut(s) 1217
MalI GATC 7 cut(s) 174, 236, 417, 862, 876, 977, 988
MboI GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
MboII GAAGA 7 cut(s) 229, 395, 403, 650, 722, 974, 1100
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 2 cut(s) 234, 986
MhlI GDGCHC 1 cut(s) 1166
MluCI AATT 7 cut(s) 138, 396, 483, 526, 826, 912, 1060
MlyI GAGTC 3 cut(s) 386, 417, 708
MmeI TCCRAC 1 cut(s) 283
MseI TTAA 5 cut(s) 126, 149, 311, 624, 1125
MslI CAYNNNNRTG 2 cut(s) 183, 514
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 3 cut(s) 165, 264, 900
MspR9I CCNGG 3 cut(s) 39, 264, 900
MunI CAATTG 1 cut(s) 912
MvaI CCWGG 1 cut(s) 39
NciI CCSGG 2 cut(s) 264, 900
NcoI CCATGG 1 cut(s) 435
NdeII GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
NlaIV GGNNCC 4 cut(s) 97, 566, 898, 1111
NmeAIII GCCGAG 1 cut(s) 742
NspI RCATGY 1 cut(s) 519
PfeI GAWTC 3 cut(s) 116, 1028, 1246
PflMI CCANNNNNTGG 1 cut(s) 1119
PleI GAGTC 3 cut(s) 385, 416, 707
PpsI GAGTC 3 cut(s) 385, 416, 707
PsiI TTATAA 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 1166
Psp6I CCWGG 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 4 cut(s) 97, 566, 898, 1111
PspPI GGNCC 4 cut(s) 256, 758, 896, 1109
PsuI RGATCY 2 cut(s) 234, 986
RsaI GTAC 3 cut(s) 207, 535, 1015
RsaNI GTAC 3 cut(s) 206, 534, 1014
RseI CAYNNNNRTG 2 cut(s) 183, 514
SacI GAGCTC 1 cut(s) 1166
SaqAI TTAA 5 cut(s) 126, 149, 311, 624, 1125
Sau3AI GATC 7 cut(s) 172, 234, 415, 860, 874, 975, 986
Sau96I GGNCC 4 cut(s) 256, 758, 896, 1109
SchI GAGTC 3 cut(s) 386, 417, 708
ScrFI CCNGG 3 cut(s) 39, 264, 900
SduI GDGCHC 1 cut(s) 1166
SfaNI GCATC 3 cut(s) 421, 483, 512
SinI GGWCC 4 cut(s) 256, 758, 896, 1109
SmiMI CAYNNNNRTG 2 cut(s) 183, 514
SmlI CTYRAG 3 cut(s) 623, 784, 1165
SmoI CTYRAG 3 cut(s) 623, 784, 1165
SpeI ACTAGT 2 cut(s) 1073, 1115
Sse9I AATT 7 cut(s) 138, 396, 483, 526, 826, 912, 1060
SstI GAGCTC 1 cut(s) 1166
StyD4I CCNGG 3 cut(s) 37, 262, 898
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 147, 569, 1156
TaiI ACGT 1 cut(s) 781
TaqI TCGA 3 cut(s) 274, 367, 406
TasI AATT 7 cut(s) 138, 396, 483, 526, 826, 912, 1060
TatI WGTACW 2 cut(s) 533, 1013
TfiI GAWTC 3 cut(s) 116, 1028, 1246
Tru1I TTAA 5 cut(s) 126, 149, 311, 624, 1125
Tru9I TTAA 5 cut(s) 126, 149, 311, 624, 1125
Van91I CCANNNNNTGG 1 cut(s) 1119
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 4 cut(s) 256, 758, 896, 1109
XagI CCTNNNNNAGG 1 cut(s) 765
XbaI TCTAGA 1 cut(s) 1249
XceI RCATGY 1 cut(s) 519
ZraI GACGTC 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.