Rorug07G0139200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000220
Physical Location & Seq
Forward (+)
10974420 .. 10974893
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0139200.1

Sequence Viewer

Length: 474 bp
ATGGCTATCTTGGAACTCTTTAGCTTCTTCTTATTCATCTTTTTCCTTCCTCACCTAGCATCCGCCTCATGCAGTGCAGCAAAATGCACCCACAGAGGGCCCCGGGTTCGATTCCCATTCTGGCTAACAAACCGCCAAGACTCGCGCTGTGGGTATCCAAAGTTTGGTCTCATATGCGATAGTGAAAGGAAGCAAACCGTTGTCGCTCTCCCGTCTACGTCGGGAGACTTCTTCGTCGACAGCATCAACTACAGGGACCAAATGGTATCGATCATCGATGCCACCGGGAACGGCTGCCTCATCAAGCGGTTCCTGGACCAGGAAATCAGCCTCGTAGATTCAGCCTTCTTATTTGCGAATGGTAATCAGTACAAGTTCTTCAATTGCTCGCCTAAAGCAGAGGAAGTACTAGCTTATTATCCAACCATCTCTTGCCTCATCAGTGACGACAGCAAGGTCATTGCTGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

157

Amino Acids

17.65

Weight (kDa)

6.7

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 24 - 93 2.8e-15 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 233, 455
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 2 cut(s) 215, 237
AccII CGCG 1 cut(s) 145
AciI CCGC 3 cut(s) 63, 133, 307
AfaI GTAC 2 cut(s) 371, 408
AfiI CCNNNNNNNGG 3 cut(s) 96, 164, 319
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 2 cut(s) 312, 318
AluBI AGCT 2 cut(s) 24, 413
AluI AGCT 2 cut(s) 24, 413
Alw26I GTCTC 2 cut(s) 173, 219
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 1 cut(s) 98
ApaI GGGCCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 77, 294
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 4 cut(s) 98, 99, 256, 316
AsuC2I CCSGG 3 cut(s) 103, 104, 286
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 2 cut(s) 256, 316
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbvI GCAGC 2 cut(s) 89, 281
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 2 cut(s) 314, 320
BciVI GTATCC 1 cut(s) 165
BcnI CCSGG 3 cut(s) 103, 104, 286
BcoDI GTCTC 2 cut(s) 173, 219
BfaI CTAG 2 cut(s) 56, 410
BfmI CTRYAG 1 cut(s) 250
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 2 cut(s) 78, 295
BlsI GCNGC 2 cut(s) 79, 296
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 5 cut(s) 103, 104, 286, 314, 320
Bme18I GGWCC 2 cut(s) 256, 316
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 4 cut(s) 98, 99, 256, 316
BmiI GGNNCC 4 cut(s) 100, 101, 257, 311
BmrFI CCNGG 5 cut(s) 103, 104, 286, 314, 320
BmsI GCATC 3 cut(s) 68, 252, 268
BpuMI CCSGG 3 cut(s) 103, 104, 286
Bsa29I ATCGAT 2 cut(s) 269, 276
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 101, 102
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 164, 319
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 2 cut(s) 314, 320
BseCI ATCGAT 2 cut(s) 269, 276
BseDI CCNNGG 2 cut(s) 101, 102
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 96, 164, 319
BseMI GCAATG 1 cut(s) 459
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 89, 281
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 100
BshVI ATCGAT 2 cut(s) 269, 276
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 103, 285
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 3 cut(s) 96, 164, 319
BsmAI GTCTC 2 cut(s) 173, 219
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 102
Bsp120I GGGCCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 3 cut(s) 63, 133, 307
BspANI GGCC 1 cut(s) 100
BspDI ATCGAT 2 cut(s) 269, 276
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 4 cut(s) 100, 101, 257, 311
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 101, 102
BssMI GATC 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 314, 320
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 389
BstENI CCTNNNNNAGG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 173, 219
BstMBI GATC 1 cut(s) 270
BstNI CCWGG 2 cut(s) 314, 320
BstSCI CCNGG 5 cut(s) 101, 102, 284, 312, 318
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 89, 281
Bsu15I ATCGAT 2 cut(s) 269, 276
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 100
BsuTUI ATCGAT 2 cut(s) 269, 276
BtsCI GGATG 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 79, 448
Cac8I GCNNGC 1 cut(s) 389
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 4 cut(s) 98, 99, 256, 316
Cfr9I CCCGGG 1 cut(s) 102
ClaI ATCGAT 2 cut(s) 269, 276
Csp6I GTAC 2 cut(s) 370, 407
CviAII CATG 2 cut(s) 69, 471
CviJI RGCY 8 cut(s) 5, 24, 100, 124, 294, 330, 344, 413
CviKI_1 RGCY 8 cut(s) 5, 24, 100, 124, 294, 330, 344, 413
CviQI GTAC 2 cut(s) 370, 407
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
DrdI GACNNNNNNGTC 2 cut(s) 233, 455
DseDI GACNNNNNNGTC 2 cut(s) 233, 455
EciI GGCGGA 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 256, 316
Eco88I CYCGRG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoO109I RGGNCCY 2 cut(s) 98, 99
EcoRII CCWGG 2 cut(s) 312, 318
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 2 cut(s) 72, 474
FaiI YATR 4 cut(s) 70, 173, 175, 472
FaqI GGGAC 1 cut(s) 269
FatI CATG 2 cut(s) 68, 470
FauNDI CATATG 1 cut(s) 173
FblI GTMKAC 2 cut(s) 215, 237
Fnu4HI GCNGC 2 cut(s) 78, 295
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 78, 295
FspBI CTAG 2 cut(s) 56, 410
GlaI GCGC 1 cut(s) 146
GluI GCNGC 2 cut(s) 78, 295
HaeIII GGCC 1 cut(s) 100
HapII CCGG 2 cut(s) 103, 285
HhaI GCGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 72, 474
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 111, 140, 338
HpaII CCGG 2 cut(s) 103, 285
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 216, 238
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 2 cut(s) 216, 238
Hpy99I CGWCG 2 cut(s) 223, 239
HpyAV CCTTC 2 cut(s) 56, 355
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 72, 77, 87
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 72, 474
HspAI GCGC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 8 cut(s) 106, 116, 238, 298, 299, 305, 326, 332
Lsp1109I GCAGC 2 cut(s) 89, 281
LweI GCATC 3 cut(s) 68, 252, 268
MaeI CTAG 2 cut(s) 56, 410
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 443
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 3 cut(s) 19, 223, 370
MfeI CAATTG 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 382
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 446
MnlI CCTC 7 cut(s) 60, 76, 89, 308, 341, 394, 446
MslI CAYNNNNRTG 1 cut(s) 464
MspI CCGG 2 cut(s) 103, 285
MspR9I CCNGG 5 cut(s) 103, 104, 286, 314, 320
MunI CAATTG 1 cut(s) 382
MvaI CCWGG 2 cut(s) 314, 320
MvnI CGCG 1 cut(s) 145
NciI CCSGG 3 cut(s) 103, 104, 286
NdeI CATATG 1 cut(s) 173
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 72, 474
NlaIV GGNNCC 4 cut(s) 100, 101, 257, 311
NmuCI GTSAC 1 cut(s) 443
PfeI GAWTC 2 cut(s) 111, 338
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 2 cut(s) 79, 296
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 312, 318
PspGI CCWGG 2 cut(s) 312, 318
PspN4I GGNNCC 4 cut(s) 100, 101, 257, 311
PspOMI GGGCCC 1 cut(s) 98
PspPI GGNCC 4 cut(s) 98, 99, 256, 316
RsaI GTAC 2 cut(s) 371, 408
RsaNI GTAC 2 cut(s) 370, 407
RseI CAYNNNNRTG 1 cut(s) 464
SalI GTCGAC 1 cut(s) 236
SatI GCNGC 2 cut(s) 78, 295
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 4 cut(s) 98, 99, 256, 316
ScaI AGTACT 1 cut(s) 408
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 5 cut(s) 103, 104, 286, 314, 320
SduI GDGCHC 1 cut(s) 102
SetI ASST 5 cut(s) 26, 57, 221, 415, 459
SfaNI GCATC 3 cut(s) 68, 252, 268
SfcI CTRYAG 1 cut(s) 250
SinI GGWCC 2 cut(s) 256, 316
SmaI CCCGGG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 1 cut(s) 382
SsiI CCGC 3 cut(s) 63, 133, 307
SspMI CTAG 2 cut(s) 56, 410
StyD4I CCNGG 5 cut(s) 101, 102, 284, 312, 318
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 221
TaqI TCGA 4 cut(s) 109, 237, 269, 276
TasI AATT 1 cut(s) 382
TatI WGTACW 2 cut(s) 369, 406
TfiI GAWTC 2 cut(s) 111, 338
TscAI CASTG 2 cut(s) 79, 448
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 2 cut(s) 77, 294
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 1 cut(s) 25
TspMI CCCGGG 1 cut(s) 102
TspRI CASTG 2 cut(s) 79, 448
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 256, 316
XagI CCTNNNNNAGG 1 cut(s) 317
XmaI CCCGGG 1 cut(s) 102
XmiI GTMKAC 2 cut(s) 215, 237
XspI CTAG 2 cut(s) 56, 410
ZrmI AGTACT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.