Rmu_sc0006736.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006736.1
OG0000220
Physical Location & Seq
Reverse (-)
47463 .. 47879
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006736.1_g000020.1.cds

Sequence Viewer

Length: 417 bp
atgtcggaccagaaaatgttgtccagattgtcactgacaatgcatcagcatttaaaaaggctggaaggaaactacagaaaaaatatcccctgttctggatcccgtgtgctgcccactgcatcgatatttgaagatatcaggaagcaagagactgtttccactgtcgtcaaatgggctcaaagtgtaactaactacttctacaatcatggttgggtactggctgaaatgaggagcaccacgaagggagaattgattcgactgggtaaaactcgatttgcgacaaatcagattgccatcgatagtatcttgaagaagaaatctgatttgagaaaattgtttacaagtagtgcatggaatgagaatgcaacgagcaagaccaaagatggcaaaaggatagaaaaaagagtcctcgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

138

Amino Acids

15.89

Weight (kDa)

10.28

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 93, 106
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 131, 310
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 93, 106
ApeKI GCWGC 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 7
BamHI GGATCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 96
BccI CCATC 2 cut(s) 302, 377
BcoDI GTCTC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 73
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 52, 128
BmuI ACTGGG 1 cut(s) 269
Bsa29I ATCGAT 2 cut(s) 122, 297
BsaBI GATNNNNATC 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 222, 264
Bse8I GATNNNNATC 1 cut(s) 293
BseCI ATCGAT 2 cut(s) 122, 297
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 222, 264
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 96
BshVI ATCGAT 2 cut(s) 122, 297
BsiHKAI GWGCWC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 178, 236
Bsp143I GATC 1 cut(s) 98
BspDI ATCGAT 2 cut(s) 122, 297
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 2 cut(s) 93, 106
BsrI ACTGG 2 cut(s) 222, 264
BssMI GATC 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 154, 163
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu15I ATCGAT 2 cut(s) 122, 297
BsuTUI ATCGAT 2 cut(s) 122, 297
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 3 cut(s) 32, 114, 159
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 2 cut(s) 122, 297
Csp6I GTAC 1 cut(s) 215
CviAII CATG 2 cut(s) 206, 351
CviJI RGCY 3 cut(s) 61, 176, 221
CviKI_1 RGCY 3 cut(s) 61, 176, 221
CviQI GTAC 1 cut(s) 215
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
DraI TTTAAA 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 7
EcoRV GATATC 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 2 cut(s) 209, 354
FaiI YATR 2 cut(s) 207, 352
FatI CATG 2 cut(s) 205, 350
Fnu4HI GCNGC 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 209, 354
HinfI GANTC 2 cut(s) 253, 405
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 7, 288, 322
Hpy188III TCNNGA 4 cut(s) 24, 96, 139, 307
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 2 cut(s) 59, 235
HpyCH4III ACNGT 2 cut(s) 154, 163
HpyCH4V TGCA 4 cut(s) 43, 119, 350, 365
Hsp92II CATG 2 cut(s) 209, 354
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 8 cut(s) 23, 37, 47, 81, 103, 124, 203, 245
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 2 cut(s) 52, 128
MaeIII GTNAC 2 cut(s) 30, 184
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 3 cut(s) 143, 322, 325
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 178, 236
MluCI AATT 2 cut(s) 248, 332
MlyI GAGTC 1 cut(s) 414
MnlI CCTC 1 cut(s) 222
Mph1103I ATGCAT 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 367
NdeII GATC 1 cut(s) 98
NlaIII CATG 2 cut(s) 209, 354
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 45
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 98
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 414
SduI GDGCHC 2 cut(s) 178, 236
SfaNI GCATC 2 cut(s) 52, 128
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 1 cut(s) 7
Sse9I AATT 2 cut(s) 248, 332
TaaI ACNGT 2 cut(s) 154, 163
TaqI TCGA 4 cut(s) 122, 256, 271, 297
TasI AATT 2 cut(s) 248, 332
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 3 cut(s) 39, 121, 166
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 30
TspRI CASTG 3 cut(s) 39, 121, 166
VpaK11BI GGWCC 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.