Rh7CG288100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000220
Physical Location & Seq
Reverse (-)
29318127 .. 29318699
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG288100.1

Sequence Viewer

Length: 573 bp
ATGGCTTTGACTCTCTCTCGGGAGGACTATCGTCTGTTCCTCTCTTTGGTGAGTGGCGGCGACAAAACCTTTCGTCTACTTCTCTTTTCATATTGTGGCGGCGATAAACCTATTCATTTGTCTCTCTCTTGGGTAGAGGAGGCGTTTTTGCTGATATTGGTAGAGATGGAGTGCTGGTCGATCAGATCTGGCGGAGTTCCAATTGGCAGTGATGGTGGATCTGCTCGCAATCAGATGACTTGTGTGTGTGATGGCTGTGGTAGCCCCGATCTGGGATTGGTTGATTTCCAGGTTATGATGACTGGAGGGCCAAAATTTAGGGTGGTGATGCCGATGATCCGAGTGCGAGTCTTCTCGCAGCTCTGGTCGTCTATTGGCGAGGATCTCGTGGTCGATGGTGATGGCATGACTCTCTGGTTGTCGTCGACAAAGGTCGAGCAATTGTTTCTGCCTGTGATGTCAGCAAAGCTGCAGTGCTTGATGCAAGGCTGGCCGTGGCGTTTCTTTGCCTCCAGTGGTGGCAAAGGTGACGTGGGGGGTGGTGGTATGTGCTGGTGGCAACGGCGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.99

Weight (kDa)

5.82

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 76, 425
AciI CCGC 3 cut(s) 57, 99, 192
AclWI GGATC 3 cut(s) 226, 331, 390
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 46, 271, 272
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 2 cut(s) 361, 469
AluI AGCT 2 cut(s) 361, 469
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 3 cut(s) 226, 331, 390
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 2 cut(s) 308, 491
ApeKI GCWGC 2 cut(s) 358, 469
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 4 cut(s) 61, 337, 410, 539
AvaI CYCGRG 1 cut(s) 18
BauI CACGAG 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 370, 456
BccI CCATC 5 cut(s) 160, 206, 245, 389, 395
BceAI ACGGC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 470
BglII AGATCT 1 cut(s) 185
BisI GCNGC 4 cut(s) 58, 100, 359, 470
BlsI GCNGC 4 cut(s) 59, 101, 360, 471
Bme1390I CCNGG 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 18
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 2 cut(s) 318, 471
BoxI GACNNNNGTC 2 cut(s) 30, 431
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 2 cut(s) 324, 496
BsaJI CCNNGG 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 271, 272
Bse1I ACTGG 2 cut(s) 307, 513
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 494
BseLI CCNNNNNNNGG 3 cut(s) 46, 271, 272
BseNI ACTGG 2 cut(s) 307, 513
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 370, 456
BshFI GGCC 2 cut(s) 310, 493
BsiHKCI CYCGRG 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 46, 271, 272
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 2 cut(s) 310, 493
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 6 cut(s) 180, 185, 218, 268, 336, 382
BspACI CCGC 3 cut(s) 57, 99, 192
BspANI GGCC 2 cut(s) 310, 493
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 3 cut(s) 226, 331, 390
BsrI ACTGG 2 cut(s) 307, 513
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 6 cut(s) 180, 185, 218, 268, 336, 382
BssSI CACGAG 1 cut(s) 386
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 226, 491
BstDSI CCRYGG 1 cut(s) 494
BstKTI GATC 6 cut(s) 183, 188, 221, 271, 339, 385
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 6 cut(s) 180, 185, 218, 268, 336, 382
BstMWI GCNNNNNNNGC 2 cut(s) 261, 490
BstNI CCWGG 1 cut(s) 290
BstPAI GACNNNNGTC 2 cut(s) 30, 431
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 370, 456
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 3 cut(s) 185, 218, 382
BstYI RGATCY 3 cut(s) 185, 218, 382
BsuRI GGCC 2 cut(s) 310, 493
BtgI CCRYGG 1 cut(s) 494
BtrI CACGTC 1 cut(s) 532
BtsI GCAGTG 2 cut(s) 214, 479
BtsIMutI CAGTG 3 cut(s) 214, 479, 520
Cac8I GCNNGC 2 cut(s) 226, 491
Cfr13I GGNCC 1 cut(s) 308
CviAII CATG 1 cut(s) 406
CviJI RGCY 8 cut(s) 5, 255, 264, 310, 361, 469, 489, 493
CviKI_1 RGCY 8 cut(s) 5, 255, 264, 310, 361, 469, 489, 493
DpnI GATC 6 cut(s) 182, 187, 220, 270, 338, 384
DpnII GATC 6 cut(s) 180, 185, 218, 268, 336, 382
EaeI YGGCCR 1 cut(s) 491
EciI GGCGGA 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 409
FaiI YATR 4 cut(s) 91, 296, 407, 548
FatI CATG 1 cut(s) 405
FblI GTMKAC 2 cut(s) 76, 425
Fnu4HI GCNGC 4 cut(s) 58, 100, 359, 470
Fsp4HI GCNGC 4 cut(s) 58, 100, 359, 470
GluI GCNGC 4 cut(s) 58, 100, 359, 470
GsuI CTGGAG 2 cut(s) 324, 496
HaeIII GGCC 2 cut(s) 310, 493
Hin1II CATG 1 cut(s) 409
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 3 cut(s) 10, 348, 409
HphI GGTGA 4 cut(s) 61, 337, 410, 539
Hpy166II GTNNAC 2 cut(s) 77, 426
Hpy188I TCNGA 3 cut(s) 185, 234, 341
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 2 cut(s) 77, 426
Hpy99I CGWCG 1 cut(s) 427
HpyCH4III ACNGT 1 cut(s) 570
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 2 cut(s) 472, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 490
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 1 cut(s) 409
Kzo9I GATC 6 cut(s) 180, 185, 218, 268, 336, 382
Lsp1109I GCAGC 2 cut(s) 370, 456
LweI GCATC 2 cut(s) 318, 471
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 527
MalI GATC 6 cut(s) 182, 187, 220, 270, 338, 384
MboI GATC 6 cut(s) 180, 185, 218, 268, 336, 382
MboII GAAGA 1 cut(s) 343
MfeI CAATTG 2 cut(s) 201, 440
MflI RGATCY 3 cut(s) 185, 218, 382
MluCI AATT 3 cut(s) 201, 314, 440
MlyI GAGTC 3 cut(s) 4, 357, 403
MnlI CCTC 7 cut(s) 16, 50, 130, 133, 299, 373, 520
MspR9I CCNGG 1 cut(s) 290
MunI CAATTG 2 cut(s) 201, 440
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 261, 490
NdeII GATC 6 cut(s) 180, 185, 218, 268, 336, 382
NlaIII CATG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 527
PkrI GCNGC 4 cut(s) 59, 101, 360, 471
PleI GAGTC 3 cut(s) 4, 356, 403
PpsI GAGTC 3 cut(s) 4, 356, 403
PshAI GACNNNNGTC 2 cut(s) 30, 431
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 474
PsuI RGATCY 3 cut(s) 185, 218, 382
SalI GTCGAC 1 cut(s) 424
SatI GCNGC 4 cut(s) 58, 100, 359, 470
Sau3AI GATC 6 cut(s) 180, 185, 218, 268, 336, 382
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 3 cut(s) 4, 357, 403
ScrFI CCNGG 1 cut(s) 290
SetI ASST 8 cut(s) 71, 112, 294, 363, 435, 471, 529, 534
SfaNI GCATC 2 cut(s) 318, 471
SfcI CTRYAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 201, 314, 440
SsiI CCGC 3 cut(s) 57, 99, 192
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 570
TaiI ACGT 1 cut(s) 534
TaqI TCGA 4 cut(s) 179, 393, 425, 435
TasI AATT 3 cut(s) 201, 314, 440
TauI GCSGC 2 cut(s) 60, 102
TscAI CASTG 3 cut(s) 214, 479, 520
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 2 cut(s) 358, 469
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 2 cut(s) 78, 104
TspRI CASTG 3 cut(s) 214, 479, 520
XapI RAATTY 1 cut(s) 314
XmiI GTMKAC 2 cut(s) 76, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.