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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 350 |
| AclWI | GGATC | 1 cut(s) | 257 |
| AcsI | RAATTY | 1 cut(s) | 92 |
| AcyI | GRCGYC | 1 cut(s) | 279 |
| AfaI | GTAC | 1 cut(s) | 114 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 205 |
| AjnI | CCWGG | 1 cut(s) | 64 |
| AluBI | AGCT | 4 cut(s) | 143, 232, 271, 354 |
| AluI | AGCT | 4 cut(s) | 143, 232, 271, 354 |
| Alw26I | GTCTC | 2 cut(s) | 123, 354 |
| AlwI | GGATC | 1 cut(s) | 257 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 65 |
| AoxI | GGCC | 1 cut(s) | 62 |
| ApeKI | GCWGC | 1 cut(s) | 176 |
| ApoI | RAATTY | 1 cut(s) | 92 |
| AspS9I | GGNCC | 1 cut(s) | 62 |
| AsuHPI | GGTGA | 1 cut(s) | 269 |
| BbvI | GCAGC | 1 cut(s) | 163 |
| BciT130I | CCWGG | 1 cut(s) | 66 |
| BcoDI | GTCTC | 2 cut(s) | 123, 354 |
| BfaI | CTAG | 1 cut(s) | 275 |
| BisI | GCNGC | 1 cut(s) | 177 |
| BlsI | GCNGC | 1 cut(s) | 178 |
| Bme1390I | CCNGG | 1 cut(s) | 66 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 205 |
| BmgT120I | GGNCC | 1 cut(s) | 62 |
| BmrFI | CCNGG | 1 cut(s) | 66 |
| BmsI | GCATC | 3 cut(s) | 17, 201, 333 |
| BpmI | CTGGAG | 1 cut(s) | 87 |
| BpuEI | CTTGAG | 2 cut(s) | 123, 206 |
| BsaHI | GRCGYC | 1 cut(s) | 279 |
| BsaI | GGTCTC | 1 cut(s) | 123 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 299, 329 |
| BseBI | CCWGG | 1 cut(s) | 66 |
| BseMII | CTCAG | 1 cut(s) | 303 |
| BseXI | GCAGC | 1 cut(s) | 163 |
| BshFI | GGCC | 1 cut(s) | 64 |
| BslFI | GGGAC | 1 cut(s) | 85 |
| BsmAI | GTCTC | 2 cut(s) | 123, 354 |
| BsmFI | GGGAC | 1 cut(s) | 85 |
| BsnI | GGCC | 1 cut(s) | 64 |
| Bso31I | GGTCTC | 1 cut(s) | 123 |
| Bsp143I | GATC | 2 cut(s) | 101, 262 |
| BspANI | GGCC | 1 cut(s) | 64 |
| BspCNI | CTCAG | 1 cut(s) | 302 |
| BspPI | GGATC | 1 cut(s) | 257 |
| BspTNI | GGTCTC | 1 cut(s) | 123 |
| BssMI | GATC | 2 cut(s) | 101, 262 |
| BssNI | GRCGYC | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 1 cut(s) | 66 |
| Bst4CI | ACNGT | 1 cut(s) | 156 |
| BstACI | GRCGYC | 1 cut(s) | 279 |
| BstDEI | CTNAG | 1 cut(s) | 289 |
| BstKTI | GATC | 2 cut(s) | 104, 265 |
| BstMAI | GTCTC | 2 cut(s) | 123, 354 |
| BstMBI | GATC | 2 cut(s) | 101, 262 |
| BstNI | CCWGG | 1 cut(s) | 66 |
| BstSCI | CCNGG | 1 cut(s) | 64 |
| BstV1I | GCAGC | 1 cut(s) | 163 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 211 |
| BsuRI | GGCC | 1 cut(s) | 64 |
| BtgZI | GCGATG | 1 cut(s) | 310 |
| CaiI | CAGNNNCTG | 1 cut(s) | 65 |
| Cfr13I | GGNCC | 1 cut(s) | 62 |
| CseI | GACGC | 1 cut(s) | 287 |
| Csp6I | GTAC | 1 cut(s) | 113 |
| CviAII | CATG | 1 cut(s) | 205 |
| CviJI | RGCY | 7 cut(s) | 64, 84, 143, 219, 232, 271, 354 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 84, 143, 219, 232, 271, 354 |
| CviQI | GTAC | 1 cut(s) | 113 |
| DdeI | CTNAG | 1 cut(s) | 289 |
| DpnI | GATC | 2 cut(s) | 103, 264 |
| DpnII | GATC | 2 cut(s) | 101, 262 |
| DriI | GACNNNNNGTC | 1 cut(s) | 205 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 205 |
| Eco31I | GGTCTC | 1 cut(s) | 123 |
| EcoO109I | RGGNCCY | 1 cut(s) | 62 |
| EcoRII | CCWGG | 1 cut(s) | 64 |
| FaeI | CATG | 1 cut(s) | 208 |
| FaiI | YATR | 7 cut(s) | 44, 126, 165, 206, 243, 350, 370 |
| FaqI | GGGAC | 1 cut(s) | 85 |
| FatI | CATG | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 1 cut(s) | 177 |
| FspBI | CTAG | 1 cut(s) | 275 |
| GluI | GCNGC | 1 cut(s) | 177 |
| GsuI | CTGGAG | 1 cut(s) | 87 |
| HaeIII | GGCC | 1 cut(s) | 64 |
| HgaI | GACGC | 1 cut(s) | 287 |
| Hin1I | GRCGYC | 1 cut(s) | 279 |
| Hin1II | CATG | 1 cut(s) | 208 |
| HindIII | AAGCTT | 3 cut(s) | 141, 230, 352 |
| HinfI | GANTC | 2 cut(s) | 200, 362 |
| HphI | GGTGA | 1 cut(s) | 269 |
| Hpy166II | GTNNAC | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 338 |
| Hpy188III | TCNNGA | 2 cut(s) | 12, 266 |
| Hpy8I | GTNNAC | 1 cut(s) | 113 |
| HpyAV | CCTTC | 2 cut(s) | 242, 293 |
| HpyCH4III | ACNGT | 1 cut(s) | 156 |
| HpyCH4V | TGCA | 2 cut(s) | 179, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 289 |
| Hsp92I | GRCGYC | 1 cut(s) | 279 |
| Hsp92II | CATG | 1 cut(s) | 208 |
| Kzo9I | GATC | 2 cut(s) | 101, 262 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| LpnPI | CCDG | 5 cut(s) | 45, 51, 78, 279, 306 |
| Lsp1109I | GCAGC | 1 cut(s) | 163 |
| LweI | GCATC | 3 cut(s) | 17, 201, 333 |
| MaeI | CTAG | 1 cut(s) | 275 |
| MaeIII | GTNAC | 1 cut(s) | 156 |
| MalI | GATC | 2 cut(s) | 103, 264 |
| MboI | GATC | 2 cut(s) | 101, 262 |
| MluCI | AATT | 3 cut(s) | 92, 252, 332 |
| MlyI | GAGTC | 2 cut(s) | 194, 356 |
| MnlI | CCTC | 4 cut(s) | 44, 62, 147, 230 |
| MslI | CAYNNNNRTG | 1 cut(s) | 209 |
| MspR9I | CCNGG | 1 cut(s) | 66 |
| MvaI | CCWGG | 1 cut(s) | 66 |
| NdeII | GATC | 2 cut(s) | 101, 262 |
| NlaIII | CATG | 1 cut(s) | 208 |
| NmuCI | GTSAC | 1 cut(s) | 156 |
| PkrI | GCNGC | 1 cut(s) | 178 |
| PleI | GAGTC | 2 cut(s) | 194, 356 |
| PpsI | GAGTC | 2 cut(s) | 194, 356 |
| PsiI | TTATAA | 1 cut(s) | 350 |
| Psp6I | CCWGG | 1 cut(s) | 64 |
| PspGI | CCWGG | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 62 |
| PstNI | CAGNNNCTG | 1 cut(s) | 65 |
| RsaI | GTAC | 1 cut(s) | 114 |
| RsaNI | GTAC | 1 cut(s) | 113 |
| RseI | CAYNNNNRTG | 1 cut(s) | 209 |
| SatI | GCNGC | 1 cut(s) | 177 |
| Sau3AI | GATC | 2 cut(s) | 101, 262 |
| Sau96I | GGNCC | 1 cut(s) | 62 |
| SchI | GAGTC | 2 cut(s) | 194, 356 |
| ScrFI | CCNGG | 1 cut(s) | 66 |
| SetI | ASST | 7 cut(s) | 43, 55, 139, 145, 234, 273, 356 |
| SfaNI | GCATC | 3 cut(s) | 17, 201, 333 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 209 |
| SmlI | CTYRAG | 2 cut(s) | 138, 221 |
| SmoI | CTYRAG | 2 cut(s) | 138, 221 |
| Sse9I | AATT | 3 cut(s) | 92, 252, 332 |
| SspMI | CTAG | 1 cut(s) | 275 |
| StyD4I | CCNGG | 1 cut(s) | 64 |
| TaaI | ACNGT | 1 cut(s) | 156 |
| TaqI | TCGA | 2 cut(s) | 79, 238 |
| TasI | AATT | 3 cut(s) | 92, 252, 332 |
| TseFI | GTSAC | 1 cut(s) | 156 |
| TseI | GCWGC | 1 cut(s) | 176 |
| Tsp45I | GTSAC | 1 cut(s) | 156 |
| TspDTI | ATGAA | 1 cut(s) | 135 |
| XapI | RAATTY | 1 cut(s) | 92 |
| XspI | CTAG | 1 cut(s) | 275 |