Rmu_sc0000666.1_g000019

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000666.1
OG0000220
Physical Location & Seq
Reverse (-)
76556 .. 79128
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000666.1_g000019.1.cds

Sequence Viewer

Length: 504 bp
atggttaagggtggttgtgggcacttcttcatgggacgacgtcgacaaagcggttggggcgtgtggggcccaattgggtcttgccgagattggtttcggcttcaattggtgccttctggatggcgacgtcgtggtggtgatgatgtttctttaaggcatgacgatggtggtatgcttacggccaccgtggcttcgaagatacactctggaagtcaaggaaccaagcaaaggaactgtttggcatatcagaagttggaaaagcttgtatactgctactacaacgtgaagttgcgattgcgagataaacaggcaaagaataatgtggtcaatgaaaacaactatatagatctagttcatgttgcaagcgagccgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagtcttatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

167

Amino Acids

18.73

Weight (kDa)

8.72

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 43, 130
AccB1I GGYRCC 1 cut(s) 109
AccI GTMKAC 2 cut(s) 43, 267
AciI CCGC 2 cut(s) 51, 371
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 180
AcyI GRCGYC 2 cut(s) 40, 127
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 2 cut(s) 262, 434
AluI AGCT 2 cut(s) 262, 434
AlwI GGATC 1 cut(s) 383
AoxI GGCC 2 cut(s) 67, 180
ApaI GGGCCC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 67, 68
AsuHPI GGTGA 1 cut(s) 149
AsuII TTCGAA 1 cut(s) 194
BaeGI GKGCMC 2 cut(s) 24, 71
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 445
BccI CCATC 2 cut(s) 114, 158
BceAI ACGGC 1 cut(s) 195
BfaI CTAG 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 188
BglII AGATCT 1 cut(s) 346
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 67, 68
BmiI GGNNCC 4 cut(s) 68, 69, 111, 220
BpiI GAAGAC 1 cut(s) 445
Bpu14I TTCGAA 1 cut(s) 194
BsaHI GRCGYC 2 cut(s) 40, 127
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 228
BseSI GKGCMC 2 cut(s) 24, 71
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 2 cut(s) 69, 182
BshNI GGYRCC 1 cut(s) 109
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 2 cut(s) 69, 182
Bsp119I TTCGAA 1 cut(s) 194
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 24, 71
Bsp143I GATC 2 cut(s) 346, 388
BspACI CCGC 2 cut(s) 51, 371
BspANI GGCC 2 cut(s) 69, 182
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 4 cut(s) 68, 69, 111, 220
BspPI GGATC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 346, 388
BssNAI GTATAC 1 cut(s) 268
BssNI GRCGYC 2 cut(s) 40, 127
Bst1107I GTATAC 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 187, 236
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 2 cut(s) 40, 127
BstAPI GCANNNNNTGC 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 364, 368, 414
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 2 cut(s) 349, 391
BstMBI GATC 2 cut(s) 346, 388
BstMWI GCNNNNNNNGC 4 cut(s) 57, 66, 188, 473
BstSLI GKGCMC 2 cut(s) 24, 71
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 69, 182
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 3 cut(s) 364, 368, 414
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 67, 68
CviAII CATG 4 cut(s) 31, 158, 356, 398
CviJI RGCY 7 cut(s) 69, 100, 182, 191, 262, 370, 434
CviKI_1 RGCY 7 cut(s) 69, 100, 182, 191, 262, 370, 434
DpnI GATC 2 cut(s) 348, 390
DpnII GATC 2 cut(s) 346, 388
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 4 cut(s) 34, 161, 359, 401
FaqI GGGAC 1 cut(s) 48
FatI CATG 4 cut(s) 30, 157, 355, 397
FblI GTMKAC 2 cut(s) 43, 267
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 1 cut(s) 350
GluI GCNGC 1 cut(s) 371
HaeIII GGCC 2 cut(s) 69, 182
Hin1I GRCGYC 2 cut(s) 40, 127
Hin1II CATG 4 cut(s) 34, 161, 359, 401
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 2 cut(s) 480, 493
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 44, 268
Hpy188I TCNGA 2 cut(s) 249, 503
Hpy188III TCNNGA 3 cut(s) 117, 207, 398
Hpy8I GTNNAC 2 cut(s) 44, 268
Hpy99I CGWCG 4 cut(s) 42, 45, 129, 132
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 187, 236
HpyCH4IV ACGT 4 cut(s) 40, 127, 282, 486
HpyCH4V TGCA 3 cut(s) 362, 416, 467
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 66, 188, 473
HpySE526I ACGT 4 cut(s) 40, 127, 282, 486
Hsp92I GRCGYC 2 cut(s) 40, 127
Hsp92II CATG 4 cut(s) 34, 161, 359, 401
Kzo9I GATC 2 cut(s) 346, 388
LpnPI CCDG 6 cut(s) 102, 192, 293, 420, 426, 462
MaeI CTAG 1 cut(s) 350
MaeII ACGT 4 cut(s) 40, 127, 282, 486
MalI GATC 2 cut(s) 348, 390
MboI GATC 2 cut(s) 346, 388
MboII GAAGA 4 cut(s) 19, 208, 437, 450
MfeI CAATTG 2 cut(s) 72, 104
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 2 cut(s) 24, 71
MluCI AATT 2 cut(s) 72, 104
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 2 cut(s) 431, 453
MseI TTAA 2 cut(s) 6, 152
MslI CAYNNNNRTG 2 cut(s) 162, 423
MunI CAATTG 2 cut(s) 72, 104
MwoI GCNNNNNNNGC 4 cut(s) 57, 66, 188, 473
NdeII GATC 2 cut(s) 346, 388
NlaIII CATG 4 cut(s) 34, 161, 359, 401
NlaIV GGNNCC 4 cut(s) 68, 69, 111, 220
NmeAIII GCCGAG 1 cut(s) 110
NspV TTCGAA 1 cut(s) 194
PagI TCATGA 1 cut(s) 397
PfeI GAWTC 1 cut(s) 480
PflFI GACNNNGTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 372
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PspN4I GGNNCC 4 cut(s) 68, 69, 111, 220
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 67, 68
PsuI RGATCY 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 39
RseI CAYNNNNRTG 2 cut(s) 162, 423
SalI GTCGAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 6, 152
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 2 cut(s) 346, 388
Sau96I GGNCC 2 cut(s) 67, 68
SchI GAGTC 1 cut(s) 502
SduI GDGCHC 2 cut(s) 24, 71
SetI ASST 8 cut(s) 43, 130, 264, 285, 423, 436, 445, 489
SfuI TTCGAA 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 162, 423
Sse9I AATT 2 cut(s) 72, 104
SsiI CCGC 2 cut(s) 51, 371
SspMI CTAG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 187, 236
TaiI ACGT 4 cut(s) 43, 130, 285, 489
TaqI TCGA 3 cut(s) 43, 194, 423
TasI AATT 2 cut(s) 72, 104
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 2 cut(s) 6, 152
Tru9I TTAA 2 cut(s) 6, 152
TspDTI ATGAA 5 cut(s) 19, 344, 345, 386, 444
Tth111I GACNNNGTC 1 cut(s) 39
XcmI CCANNNNNNNNNTGG 1 cut(s) 399
XmiI GTMKAC 2 cut(s) 43, 267
XspI CTAG 1 cut(s) 350
ZraI GACGTC 2 cut(s) 41, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.