pycom11g17730

source UniProtKB

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
20026185 .. 20026499
315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g17730.1

Sequence Viewer

Length: 315 bp
ATGTCGAATGGATGGTCGGATGGCAAAAGTAGATGTTTAATCAACTTTCTTGTCAATAGCCCTCAAGGTACTTGGTTCTTGAAATCGGTTGATGCATCGGCCTCTATTAAGAATGGAGATTTGTTGTATGGCTATTTGGATGACGTTATTCAAGAAATTGGGGAGGAGAATGTGGTTCAAGTTATATCTGACAATGCTTCGAACTACAAGAATGCCGGGGCAAAACTTATGGAGAGGAAAGAGAAGGTGTGGTGGACTCCATGTGCGGCTCATTGCATTGATTTGATGCTAGAAGATATTTCTAAGATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.59

Weight (kDa)

4.81

Isoelectric Point (pI)

19.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 1 - 103 2.9e-43 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AfaI GTAC 1 cut(s) 70
AgsI TTSAA 3 cut(s) 82, 152, 179
AoxI GGCC 1 cut(s) 99
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 217
AsuII TTCGAA 1 cut(s) 200
BccI CCATC 3 cut(s) 6, 14, 301
BcnI CCSGG 1 cut(s) 217
BfaI CTAG 1 cut(s) 290
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 3 cut(s) 82, 104, 276
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 3 cut(s) 17, 25, 145
BseMI GCAATG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 216
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 200
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 3 cut(s) 17, 25, 145
BstSCI CCNGG 1 cut(s) 215
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 17, 25, 145
Csp6I GTAC 1 cut(s) 69
CviAII CATG 2 cut(s) 261, 312
CviJI RGCY 4 cut(s) 60, 101, 132, 269
CviKI_1 RGCY 4 cut(s) 60, 101, 132, 269
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 2 cut(s) 264, 315
FaiI YATR 5 cut(s) 129, 185, 230, 262, 313
FatI CATG 2 cut(s) 260, 311
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 3 cut(s) 24, 32, 152
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 216
Hin1II CATG 2 cut(s) 264, 315
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 19, 190
Hpy188III TCNNGA 2 cut(s) 79, 152
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 95, 276
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 264, 315
LpnPI CCDG 1 cut(s) 229
LweI GCATC 3 cut(s) 82, 104, 276
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 144
MboII GAAGA 1 cut(s) 305
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 4 cut(s) 72, 112, 157, 228
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 2 cut(s) 38, 108
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 217
Mva1269I GAATGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 217
NlaIII CATG 2 cut(s) 264, 315
NsiI ATGCAT 1 cut(s) 97
NspV TTCGAA 1 cut(s) 200
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 38, 108
SatI GCNGC 1 cut(s) 267
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 217
SetI ASST 3 cut(s) 70, 147, 249
SfaNI GCATC 3 cut(s) 82, 104, 276
SfuI TTCGAA 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 5, 200
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 38, 108
Tru9I TTAA 2 cut(s) 38, 108
XspI CTAG 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.