RchiOBHm_Chr5g0012611

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000220
Physical Location & Seq
Forward (+)
8497789 .. 8499549
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29317

Sequence Viewer

Length: 357 bp
ATGCTAAATTACTTGGATAATATTGTGGAGGAGGTAGGGGAGGAGAATGTTGTCCAAATTGTTACAGACAATGCTTCCAATTATAAGTGGGCGGGAAAGGAACTAATGAAGCATACAAGCAAATTGTGGTGGACTCCGTGTGCGGCTCATTGCATTGACTTGATGTTAGAAGATATTAGCAAGATGAAAGTCTTTGAAACTACCATTCAAAGAGCTAAGCAAATTGTGAAATTCATTTATGGGCACACACAAGTTCTTTCCATTATGAGGAAATTCACCGGCAACAAGGAGATTATTCGGCCGGTGGTTACAAGGTTTGCCACATATTTTCTCTCTCTTCAAAGTTTATATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

118

Amino Acids

13.79

Weight (kDa)

8.89

Isoelectric Point (pI)

24.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 2 - 75 2.9e-29 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AciI CCGC 2 cut(s) 92, 143
AcoI YGGCCR 1 cut(s) 299
AcsI RAATTY 2 cut(s) 230, 272
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 3 cut(s) 197, 209, 341
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 230, 272
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 246
BisI GCNGC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 2 cut(s) 278, 301
Bse3DI GCAATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 148
BseRI GAGGAG 2 cut(s) 44, 56
BseSI GKGCMC 1 cut(s) 246
BseX3I CGGCCG 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 302
BsiSI CCGG 2 cut(s) 279, 302
BslI CCNNNNNNNGG 1 cut(s) 267
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 2 cut(s) 92, 143
BspANI GGCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 2 cut(s) 278, 301
BssAI RCCGGY 2 cut(s) 278, 301
Bst6I CTCTTC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 302
BstSLI GKGCMC 1 cut(s) 246
BstZI CGGCCG 1 cut(s) 299
BsuRI GGCC 1 cut(s) 301
Cfr10I RCCGGY 2 cut(s) 278, 301
CviJI RGCY 3 cut(s) 146, 215, 301
CviKI_1 RGCY 3 cut(s) 146, 215, 301
DdeI CTNAG 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 299
EagI CGGCCG 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
EclXI CGGCCG 1 cut(s) 299
Eco52I CGGCCG 1 cut(s) 299
FaiI YATR 7 cut(s) 84, 114, 240, 266, 325, 349, 351
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 301
HapII CCGG 2 cut(s) 279, 302
HinfI GANTC 1 cut(s) 133
HpaII CCGG 2 cut(s) 279, 302
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 132
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 216
LpnPI CCDG 2 cut(s) 292, 315
MaeIII GTNAC 2 cut(s) 61, 307
MboII GAAGA 2 cut(s) 182, 329
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 7 cut(s) 7, 57, 79, 122, 222, 230, 272
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 4 cut(s) 22, 25, 34, 261
MspI CCGG 2 cut(s) 279, 302
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PsiI TTATAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 144
SchI GAGTC 1 cut(s) 127
SduI GDGCHC 1 cut(s) 246
SetI ASST 3 cut(s) 36, 217, 317
Sse9I AATT 7 cut(s) 7, 57, 79, 122, 222, 230, 272
SsiI CCGC 2 cut(s) 92, 143
SspI AATATT 1 cut(s) 22
TasI AATT 7 cut(s) 7, 57, 79, 122, 222, 230, 272
TauI GCSGC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 122, 200, 223
TspGWI ACGGA 1 cut(s) 126
XapI RAATTY 2 cut(s) 230, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.