Rmu_sc0007883.1_g000003

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007883.1
OG0000220
Physical Location & Seq
Reverse (-)
15902 .. 18181
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007883.1_g000003.1.cds

Sequence Viewer

Length: 1179 bp
atggagaacaaaacccagccactccgccctagatcaagatcgttgaaccaccgcacacgatccttaaagctacgccgtcgttgttccttaaccctcttcgatctccggccatcttttcaacatatcgccgccaccaacgtgctcagactgatccaagcttcaaaacccaagacttcgctagaccacagaggccggaataccatcggacgactccgtcgccggtgctctcagctctgcgcttctcgttcttcaacctctggtaaaaatagagccacaccaccactaagaaaaatgtttaagctttctttgttttctgtcatgtccaagcaaaactataaagaagctaaaagttcatttcatgttgcaagcgagccgcttgataatggcattgtatactgctactacaacatgaagctgcggctgcgagataaacaggcaaagaataatgtggtcattgaaaacaactatatagatctacttcatgttgcaagcgagccacttgataatggcattgatctacttcatgattggattatgcctgcacacctcgatgatgaatctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagagttttatctgaagaaggtggaagcggaataggtggtggaggtgaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacggagtgagaacagctagtcatggtgctaaagagaagatccgatatgggaggaggactagaggtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagatttgactctatcagtttaggcacagagcgcagtgggatctcaaatgaatctcatgaaggcaacaatcaatttggttatgatgcttatggatataatcaatatggagaagtatatgatcagtcatctagttgggttcatccttattatccccttataggggaaatagtcaaaagctctaaagagatctataactatcatgctcatcactacaatccgcactatatgggtcatatgtcttggtctgattattgcattttcgtagaccagcgagcggcttttcaactgcctagagtctctttttggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

392

Amino Acids

44.53

Weight (kDa)

8.96

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 1142
AccI GTMKAC 2 cut(s) 393, 1131
AciI CCGC 8 cut(s) 25, 52, 129, 374, 418, 645, 1085, 1142
AclWI GGATC 4 cut(s) 54, 145, 787, 914
AcoI YGGCCR 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 651
AdeI CACNNNGTG 1 cut(s) 760
AfaI GTAC 1 cut(s) 838
AfiI CCNNNNNNNGG 4 cut(s) 1025, 1026, 1027, 1141
AflII CTTAAG 1 cut(s) 865
AgsI TTSAA 7 cut(s) 46, 119, 162, 252, 458, 858, 1151
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 8 cut(s) 70, 158, 232, 301, 344, 415, 770, 1044
AluI AGCT 8 cut(s) 70, 158, 232, 301, 344, 415, 770, 1044
Alw21I GWGCWC 2 cut(s) 144, 227
Alw26I GTCTC 1 cut(s) 1168
AlwI GGATC 4 cut(s) 54, 145, 787, 914
AoxI GGCC 2 cut(s) 107, 190
ApeKI GCWGC 2 cut(s) 415, 421
AspLEI GCGC 2 cut(s) 239, 900
AsuHPI GGTGA 1 cut(s) 674
BbsI GAAGAC 2 cut(s) 571, 756
Bbv12I GWGCWC 2 cut(s) 144, 227
BbvI GCAGC 2 cut(s) 402, 408
BccI CCATC 4 cut(s) 118, 209, 689, 850
BceAI ACGGC 1 cut(s) 60
BclI TGATCA 3 cut(s) 730, 829, 985
BcoDI GTCTC 1 cut(s) 1168
BfaI CTAG 6 cut(s) 30, 179, 771, 813, 996, 1158
BfrI CTTAAG 1 cut(s) 865
BglII AGATCT 2 cut(s) 472, 1053
BisI GCNGC 6 cut(s) 129, 374, 416, 419, 422, 1143
BlsI GCNGC 6 cut(s) 130, 375, 417, 420, 423, 1144
BmsI GCATC 1 cut(s) 940
BpiI GAAGAC 2 cut(s) 571, 756
BsaBI GATNNNNATC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 754
Bsc4I CCNNNNNNNGG 4 cut(s) 1025, 1026, 1027, 1141
Bse118I RCCGGY 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 3 cut(s) 700, 1006, 1179
BseJI GATNNNNATC 1 cut(s) 37
BseLI CCNNNNNNNGG 4 cut(s) 1025, 1026, 1027, 1141
BseMII CTCAG 2 cut(s) 157, 242
BseRI GAGGAG 1 cut(s) 820
BseXI GCAGC 2 cut(s) 402, 408
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 2 cut(s) 109, 192
BsiHKAI GWGCWC 2 cut(s) 144, 227
BsiSI CCGG 3 cut(s) 106, 193, 220
BslI CCNNNNNNNGG 4 cut(s) 1025, 1026, 1027, 1141
BsmAI GTCTC 1 cut(s) 1168
BsnI GGCC 2 cut(s) 109, 192
Bsp1286I GDGCHC 2 cut(s) 144, 227
BspACI CCGC 8 cut(s) 25, 52, 129, 374, 418, 645, 1085, 1142
BspANI GGCC 2 cut(s) 109, 192
BspCNI CTCAG 2 cut(s) 156, 241
BspHI TCATGA 2 cut(s) 523, 922
BspPI GGATC 4 cut(s) 54, 145, 787, 914
BspTI CTTAAG 1 cut(s) 865
BsrBI CCGCTC 1 cut(s) 1142
BsrFI RCCGGY 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 754
BssNAI GTATAC 1 cut(s) 394
Bst1107I GTATAC 1 cut(s) 394
Bst6I CTCTTC 2 cut(s) 101, 576
BstAFI CTTAAG 1 cut(s) 865
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 6 cut(s) 367, 371, 490, 494, 540, 1140
BstDEI CTNAG 3 cut(s) 143, 228, 284
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 3 cut(s) 700, 1006, 1179
BstHHI GCGC 2 cut(s) 239, 900
BstMAI GTCTC 1 cut(s) 1168
BstMWI GCNNNNNNNGC 3 cut(s) 421, 599, 897
BstV1I GCAGC 2 cut(s) 402, 408
BstV2I GAAGAC 2 cut(s) 571, 756
BstX2I RGATCY 4 cut(s) 472, 792, 906, 1053
BstYI RGATCY 4 cut(s) 472, 792, 906, 1053
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 109, 192
BtgI CCRYGG 1 cut(s) 754
BtsCI GGATG 3 cut(s) 700, 1006, 1179
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 1 cut(s) 907
Cac8I GCNNGC 6 cut(s) 367, 371, 490, 494, 540, 1140
CciI TCATGA 2 cut(s) 523, 922
CfoI GCGC 2 cut(s) 239, 900
Cfr10I RCCGGY 1 cut(s) 219
Csp6I GTAC 1 cut(s) 837
CviAII CATG 9 cut(s) 319, 359, 409, 482, 524, 734, 776, 923, 1067
CviQI GTAC 1 cut(s) 837
DdeI CTNAG 3 cut(s) 143, 228, 284
DraIII CACNNNGTG 1 cut(s) 760
DrdI GACNNNNNNGTC 1 cut(s) 213
DseDI GACNNNNNNGTC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 107
Eam1104I CTCTTC 2 cut(s) 101, 576
EarI CTCTTC 2 cut(s) 101, 576
EciI GGCGGA 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 651
FaeI CATG 9 cut(s) 322, 362, 412, 485, 527, 737, 779, 926, 1070
FatI CATG 9 cut(s) 318, 358, 408, 481, 523, 733, 775, 922, 1066
FauNDI CATATG 1 cut(s) 1101
FbaI TGATCA 3 cut(s) 730, 829, 985
FblI GTMKAC 2 cut(s) 393, 1131
Fnu4HI GCNGC 6 cut(s) 129, 374, 416, 419, 422, 1143
FokI GGATG 2 cut(s) 707, 993
Fsp4HI GCNGC 6 cut(s) 129, 374, 416, 419, 422, 1143
FspBI CTAG 6 cut(s) 30, 179, 771, 813, 996, 1158
GlaI GCGC 2 cut(s) 238, 899
GluI GCNGC 6 cut(s) 129, 374, 416, 419, 422, 1143
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 2 cut(s) 109, 192
HapII CCGG 3 cut(s) 106, 193, 220
HhaI GCGC 2 cut(s) 239, 900
Hin1II CATG 9 cut(s) 322, 362, 412, 485, 527, 737, 779, 926, 1070
Hin6I GCGC 2 cut(s) 237, 898
HinP1I GCGC 2 cut(s) 237, 898
HindIII AAGCTT 2 cut(s) 156, 299
HinfI GANTC 7 cut(s) 210, 557, 606, 702, 875, 917, 1161
HpaII CCGG 3 cut(s) 106, 193, 220
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 2 cut(s) 394, 1132
Hpy188I TCNGA 6 cut(s) 146, 206, 631, 797, 847, 1114
Hpy188III TCNNGA 4 cut(s) 36, 524, 561, 923
Hpy8I GTNNAC 2 cut(s) 394, 1132
Hpy99I CGWCG 2 cut(s) 81, 219
HpyAV CCTTC 3 cut(s) 629, 713, 920
HpyCH4IV ACGT 2 cut(s) 138, 612
HpyCH4V TGCA 6 cut(s) 365, 488, 542, 593, 821, 1122
HpyF10VI GCNNNNNNNGC 3 cut(s) 421, 599, 897
HpyF3I CTNAG 3 cut(s) 143, 228, 284
HpySE526I ACGT 2 cut(s) 138, 612
Hsp92II CATG 9 cut(s) 322, 362, 412, 485, 527, 737, 779, 926, 1070
HspAI GCGC 2 cut(s) 237, 898
Ksp22I TGATCA 3 cut(s) 730, 829, 985
Lsp1109I GCAGC 2 cut(s) 402, 408
LweI GCATC 1 cut(s) 940
MaeI CTAG 6 cut(s) 30, 179, 771, 813, 996, 1158
MaeII ACGT 2 cut(s) 138, 612
MbiI CCGCTC 1 cut(s) 1142
MboII GAAGA 9 cut(s) 88, 240, 563, 576, 644, 678, 761, 802, 846
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 4 cut(s) 472, 792, 906, 1053
MhlI GDGCHC 2 cut(s) 144, 227
MluCI AATT 4 cut(s) 707, 724, 858, 938
MlyI GAGTC 3 cut(s) 204, 869, 1170
MseI TTAA 4 cut(s) 65, 89, 297, 866
MslI CAYNNNNRTG 2 cut(s) 137, 549
MspCI CTTAAG 1 cut(s) 865
MspI CCGG 3 cut(s) 106, 193, 220
MunI CAATTG 1 cut(s) 858
MwoI GCNNNNNNNGC 3 cut(s) 421, 599, 897
NdeI CATATG 1 cut(s) 1101
NlaIII CATG 9 cut(s) 322, 362, 412, 485, 527, 737, 779, 926, 1070
OliI CACNNNNGTG 1 cut(s) 137
PagI TCATGA 2 cut(s) 523, 922
PfeI GAWTC 4 cut(s) 557, 606, 702, 917
PflFI GACNNNGTC 1 cut(s) 213
PkrI GCNGC 6 cut(s) 130, 375, 417, 420, 423, 1144
PleI GAGTC 3 cut(s) 204, 869, 1169
PpsI GAGTC 3 cut(s) 204, 869, 1169
PspFI CCCAGC 1 cut(s) 15
PsuI RGATCY 4 cut(s) 472, 792, 906, 1053
PsyI GACNNNGTC 1 cut(s) 213
RsaI GTAC 1 cut(s) 838
RsaNI GTAC 1 cut(s) 837
RseI CAYNNNNRTG 2 cut(s) 137, 549
SaqAI TTAA 4 cut(s) 65, 89, 297, 866
SatI GCNGC 6 cut(s) 129, 374, 416, 419, 422, 1143
SchI GAGTC 3 cut(s) 204, 869, 1170
SduI GDGCHC 2 cut(s) 144, 227
SfaNI GCATC 1 cut(s) 940
SgrAI CRCCGGYG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 137, 549
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
Sse9I AATT 4 cut(s) 707, 724, 858, 938
SsiI CCGC 8 cut(s) 25, 52, 129, 374, 418, 645, 1085, 1142
SspMI CTAG 6 cut(s) 30, 179, 771, 813, 996, 1158
TaiI ACGT 2 cut(s) 141, 615
TaqI TCGA 2 cut(s) 99, 549
TasI AATT 4 cut(s) 707, 724, 858, 938
TauI GCSGC 4 cut(s) 131, 376, 421, 1145
TfiI GAWTC 4 cut(s) 557, 606, 702, 917
Tru1I TTAA 4 cut(s) 65, 89, 297, 866
Tru9I TTAA 4 cut(s) 65, 89, 297, 866
TscAI CASTG 1 cut(s) 907
TseI GCWGC 2 cut(s) 415, 421
TspGWI ACGGA 2 cut(s) 203, 771
TspRI CASTG 1 cut(s) 907
Tth111I GACNNNGTC 1 cut(s) 213
Vha464I CTTAAG 1 cut(s) 865
XmiI GTMKAC 2 cut(s) 393, 1131
XspI CTAG 6 cut(s) 30, 179, 771, 813, 996, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.