Rroxscaffold_6G00392840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000220
Physical Location & Seq
Reverse (-)
12579600 .. 12596235
16636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392840.1

Sequence Viewer

Length: 387 bp
ATGAATAAGGCGCCCAATGTAGCGGTCAATGCTTTGCACAAGCAAACTTCCCTAAGGGGAGCGGCACCATGCGCGGACAAACGTTGCGGAATTTTGACATTCGGGGTTTCAAAAAGCACTAGTGAAAAATCAATTGATGATGATGGTGATGGTGGTAATACTGGTGGTGGTGGAAGATATCATGCCTATGGTGGTAGTGGATGTGATAACTCGTGTGACAATAGTAGTTATGACGACACTAATCGTGAGGCAAATTATGGAAATGACGGGGGAGTGGCAAATCATGGCACTACAACTAATATAGTAATGATGATCCTAGTGCAAATAGTGAATACAATTCTAGAGCTAGAGATACACAAGGAAGACGCGATAACCATTTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.44

Weight (kDa)

4.97

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 10, 64
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 2 cut(s) 74, 368
AciI CCGC 4 cut(s) 23, 62, 74, 87
AclI AACGTT 1 cut(s) 82
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 11
AgsI TTSAA 1 cut(s) 111
AhlI ACTAGT 1 cut(s) 119
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
AlwI GGATC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 90
AspLEI GCGC 2 cut(s) 13, 74
AsuHPI GGTGA 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 53
BanI GGYRCC 2 cut(s) 10, 64
BauI CACGAG 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 369
BccI CCATC 2 cut(s) 137, 143
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 4 cut(s) 120, 317, 341, 347
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 12, 66
BpiI GAAGAC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 166
Bse21I CCTNAGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 74, 368
BshNI GGYRCC 2 cut(s) 10, 64
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 4 cut(s) 23, 62, 74, 87
BspFNI CGCG 2 cut(s) 74, 368
BspLI GGNNCC 2 cut(s) 12, 66
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 2 cut(s) 10, 64
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 166
BssMI GATC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 2 cut(s) 74, 368
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 74
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 29, 71
BstUI CGCG 2 cut(s) 74, 368
BstV2I GAAGAC 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 206
CfoI GCGC 2 cut(s) 13, 74
CseI GACGC 1 cut(s) 374
CviAII CATG 3 cut(s) 69, 182, 284
CviJI RGCY 1 cut(s) 346
CviKI_1 RGCY 1 cut(s) 346
DdeI CTNAG 1 cut(s) 53
DinI GGCGCC 1 cut(s) 12
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 53
EcoRV GATATC 1 cut(s) 179
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaeI CATG 3 cut(s) 72, 185, 287
FaiI YATR 7 cut(s) 70, 183, 189, 231, 258, 285, 302
FatI CATG 3 cut(s) 68, 181, 283
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 4 cut(s) 120, 317, 341, 347
GlaI GCGC 2 cut(s) 12, 73
GluI GCNGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 14
HgaI GACGC 1 cut(s) 374
HhaI GCGC 2 cut(s) 13, 74
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 3 cut(s) 72, 185, 287
Hin6I GCGC 2 cut(s) 11, 72
HinP1I GCGC 2 cut(s) 11, 72
HphI GGTGA 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 245, 341
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 37, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 71
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 72, 185, 287
HspAI GCGC 2 cut(s) 11, 72
KasI GGCGCC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 1 cut(s) 147
MaeI CTAG 4 cut(s) 120, 317, 341, 347
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 314
MbiI CCGCTC 1 cut(s) 62
MboI GATC 1 cut(s) 312
MboII GAAGA 2 cut(s) 186, 374
MfeI CAATTG 1 cut(s) 132
MluCI AATT 4 cut(s) 90, 132, 253, 336
Mly113I GGCGCC 1 cut(s) 11
MnlI CCTC 1 cut(s) 241
MslI CAYNNNNRTG 1 cut(s) 186
MunI CAATTG 1 cut(s) 132
MvnI CGCG 2 cut(s) 74, 368
MwoI GCNNNNNNNGC 2 cut(s) 29, 71
NarI GGCGCC 1 cut(s) 11
NdeII GATC 1 cut(s) 312
NlaIII CATG 3 cut(s) 72, 185, 287
NlaIV GGNNCC 2 cut(s) 12, 66
NmuCI GTSAC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 64
PluTI GGCGCC 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 12, 66
RseI CAYNNNNRTG 1 cut(s) 186
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 312
SetI ASST 2 cut(s) 85, 348
SfoI GGCGCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 186
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 4 cut(s) 90, 132, 253, 336
SsiI CCGC 4 cut(s) 23, 62, 74, 87
SspDI GGCGCC 1 cut(s) 10
SspMI CTAG 4 cut(s) 120, 317, 341, 347
TaiI ACGT 1 cut(s) 85
TasI AATT 4 cut(s) 90, 132, 253, 336
TauI GCSGC 1 cut(s) 65
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 90
XbaI TCTAGA 1 cut(s) 340
XspI CTAG 4 cut(s) 120, 317, 341, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.