RchiOBHm_Chr2g0121831

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000220
Physical Location & Seq
Reverse (-)
34716251 .. 34718073
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49428

Sequence Viewer

Length: 1515 bp
ATGCCAATGTTGTATGATTTATTTAAGAAGGTGAGAACAAAGCTGGAAGAAGTCAGGAATACAGTTTGGGTCAGAAAAATCATCGACGATAGATGGTTTAAGCAATTGTGTCATCCATTACATGCAGCAGCTTATTATTTGAATCCAATGTTCCAGTATAGTGAAGGAATTGGTGATGATCCAGAGCTACTAGACGCCCTTCACTCAGTTTTTGCAAAGTTAGACCCAAACTCCATAGGCATCGCACAATTCGGAAATGAGATTATAAGCTTTAGAGACTCATCATACGGATTTGGAAGACCAGCTGCCATTGCTGCAAGGAAAACAATGACTTCATATGAATGGTGGAACATGTATGGGGGTGATGCACCTACACTTCGTAAATTGGCAATGAAGATCCTATCTCAAACCACATCATCTTCTGCTTGCGAGCGAAATTGGAGCACATTTGCTCTTATCCATACGAAGCAAAGAAATCGTCTGGCACATAACAAACTTGAGCAAATTGTGTATTGTTATTACAACATGAAGCTACAATTGCGAGATGCAAAAGCAGTTGCAGATAGAGTTGCGGAGACCAGTTATTTAGACCTATTCAATATAGTTGCAGATATAGGTGCGGAGGAAACTGCTGATCCAATATACCATTGGGTTCGACCTTTACATTTAGATGATGCAACAGGAAATCCAGATCCAAATATAGCAACTCATGCTCGTGGAATGGGAATTGATGTGGATAAGGTAATGAAGAAAGAAGTAACAGATCATTCTGATGAAAGTGATGGAAGTGGTTATAAATTATCAAGAGGCACTAGTGAAAAATCAATTGATGATGATGATGATGATGGTGATGGTGGTAATACTGGTGGTGGTAGCAAATATCATGCCTATGGTGGTAGTACACGTGATAACTCGTGTGACAATAGTAGTTATGACGACACTAATCGTGAGGCGAATTATGGAAATGACAGGGGGAGTGGCAAATCATGGCACTACAACCAATATAGTAGTGATCATCATACTACTTATCCTGATGCAAATCGTGAATACAATTCTAGAGCTAGGGATACACAAGGAAGACGCGATAGCCATTTGTCTCTAAATGAGTTTGAATCACTTTCTTCCAGTCTTGGCTCAATGGACATAGGAACTCAATATAGTGATAACCCTAACCCATTCCATTCTCATTATCCTCATCATGAAATGAGTTCTCCCTCAGAAAGTACTTACGGAATTGGATCAAGCTCACAAGGTGGAAGCACATATGGCCTTTTTGATCATTCTTCGTCCCAAATGTCGCATGCTTCATACAATGAAACACCATATTGGGTAATTCCACAATTTCCGATATATGGATTGCATGTGGGAAGAGATCAACACACATACATTACCCATGTGATGAAGTACCAAAATCATTTTCAAAATTCATGTACTTGGGAGCAGTATTGTATGATACTAAATGGAAGCAGTTCAACCACATGGATCGAACCACATCGTAGTAGCTCTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

504

Amino Acids

57.1

Weight (kDa)

5.73

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 109 - 176 1.7e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 266, 795
AccII CGCG 1 cut(s) 1083
AciI CCGC 2 cut(s) 572, 620
AclWI GGATC 6 cut(s) 173, 391, 629, 686, 1246, 1490
AcsI RAATTY 1 cut(s) 1423
AcvI CACGTG 1 cut(s) 905
AcyI GRCGYC 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 1253
AfaI GTAC 4 cut(s) 901, 1225, 1406, 1432
AfiI CCNNNNNNNGG 1 cut(s) 1352
AflIII ACRYGT 2 cut(s) 351, 902
AgsI TTSAA 5 cut(s) 142, 598, 1112, 1421, 1473
AhlI ACTAGT 1 cut(s) 812
AjuI GAANNNNNNNTTGG 2 cut(s) 1401, 1433
AluBI AGCT 9 cut(s) 43, 131, 187, 270, 305, 532, 1061, 1245, 1503
AluI AGCT 9 cut(s) 43, 131, 187, 270, 305, 532, 1061, 1245, 1503
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 3 cut(s) 270, 569, 1101
AlwI GGATC 6 cut(s) 173, 391, 629, 686, 1246, 1490
AoxI GGCC 1 cut(s) 1267
ApeKI GCWGC 4 cut(s) 125, 128, 305, 314
ApoI RAATTY 1 cut(s) 1423
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
Asp700I GAANNNNTTC 1 cut(s) 1468
AsuHPI GGTGA 4 cut(s) 43, 185, 374, 860
BauI CACGAG 2 cut(s) 714, 913
BbrPI CACGTG 1 cut(s) 905
BbsI GAAGAC 2 cut(s) 304, 1084
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 4 cut(s) 137, 140, 292, 301
BccI CCATC 4 cut(s) 87, 776, 839, 845
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciVI GTATCC 1 cut(s) 1060
BclI TGATCA 2 cut(s) 1012, 1276
BcoDI GTCTC 3 cut(s) 270, 569, 1101
BcuI ACTAGT 1 cut(s) 812
BfaI CTAG 4 cut(s) 191, 813, 1056, 1062
BfuI GTATCC 1 cut(s) 1060
BisI GCNGC 4 cut(s) 126, 129, 306, 315
BlsI GCNGC 4 cut(s) 127, 130, 307, 316
BmcAI AGTACT 1 cut(s) 1225
BmsI GCATC 5 cut(s) 249, 355, 535, 664, 1024
BpiI GAAGAC 2 cut(s) 304, 1084
BpuEI CTTGAG 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 905
BsaBI GATNNNNATC 1 cut(s) 1038
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 1352
Bse1I ACTGG 4 cut(s) 154, 579, 868, 1125
Bse3DI GCAATG 2 cut(s) 309, 396
Bse8I GATNNNNATC 1 cut(s) 1038
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 1038
BseLI CCNNNNNNNGG 1 cut(s) 1352
BseMI GCAATG 2 cut(s) 309, 396
BseMII CTCAG 2 cut(s) 219, 1230
BseNI ACTGG 4 cut(s) 154, 579, 868, 1125
BseXI GCAGC 4 cut(s) 137, 140, 292, 301
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 1 cut(s) 1269
BsiHKAI GWGCWC 1 cut(s) 446
BslFI GGGAC 1 cut(s) 1273
BslI CCNNNNNNNGG 1 cut(s) 1352
BsmAI GTCTC 3 cut(s) 270, 569, 1101
BsmFI GGGAC 1 cut(s) 1273
BsnI GGCC 1 cut(s) 1269
Bso31I GGTCTC 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 446
BspACI CCGC 2 cut(s) 572, 620
BspANI GGCC 1 cut(s) 1269
BspCNI CTCAG 2 cut(s) 218, 1229
BspFNI CGCG 1 cut(s) 1083
BspHI TCATGA 1 cut(s) 1198
BspPI GGATC 6 cut(s) 173, 391, 629, 686, 1246, 1490
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 2 cut(s) 309, 396
BsrI ACTGG 4 cut(s) 154, 579, 868, 1125
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 2 cut(s) 714, 913
Bst2BI CACGAG 2 cut(s) 714, 913
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 1363
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 3 cut(s) 427, 431, 1302
BstDEI CTNAG 2 cut(s) 205, 1216
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 1083
BstMAI GTCTC 3 cut(s) 270, 569, 1101
BstMWI GCNNNNNNNGC 5 cut(s) 311, 314, 538, 710, 1266
BstNSI RCATGY 4 cut(s) 125, 355, 1304, 1364
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 4 cut(s) 137, 140, 292, 301
BstV2I GAAGAC 2 cut(s) 304, 1084
BstX2I RGATCY 2 cut(s) 396, 691
BstYI RGATCY 2 cut(s) 396, 691
BsuI GTATCC 1 cut(s) 1060
BsuRI GGCC 1 cut(s) 1269
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 427, 431, 1302
CciI TCATGA 1 cut(s) 1198
CseI GACGC 2 cut(s) 203, 1089
Csp6I GTAC 4 cut(s) 900, 1224, 1405, 1431
CviQI GTAC 4 cut(s) 900, 1224, 1405, 1431
DdeI CTNAG 2 cut(s) 205, 1216
DraIII CACNNNGTG 1 cut(s) 1253
Eam1104I CTCTTC 1 cut(s) 1363
EarI CTCTTC 1 cut(s) 1363
Eco31I GGTCTC 1 cut(s) 569
Eco72I CACGTG 1 cut(s) 905
FaqI GGGAC 1 cut(s) 1273
FauNDI CATATG 2 cut(s) 337, 1264
FbaI TGATCA 2 cut(s) 1012, 1276
Fnu4HI GCNGC 4 cut(s) 126, 129, 306, 315
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 126, 129, 306, 315
FspBI CTAG 4 cut(s) 191, 813, 1056, 1062
GluI GCNGC 4 cut(s) 126, 129, 306, 315
HaeIII GGCC 1 cut(s) 1269
HgaI GACGC 2 cut(s) 203, 1089
Hin1I GRCGYC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 3 cut(s) 142, 278, 1112
HphI GGTGA 4 cut(s) 43, 185, 374, 860
Hpy166II GTNNAC 1 cut(s) 902
Hpy188I TCNGA 5 cut(s) 74, 254, 772, 1219, 1347
Hpy188III TCNNGA 9 cut(s) 55, 182, 689, 804, 947, 1031, 1043, 1056, 1199
Hpy8I GTNNAC 1 cut(s) 902
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 22, 158, 209
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 904
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 314, 538, 710, 1266
HpyF3I CTNAG 2 cut(s) 205, 1216
HpySE526I ACGT 1 cut(s) 904
Hsp92I GRCGYC 1 cut(s) 195
Ksp22I TGATCA 2 cut(s) 1012, 1276
LmnI GCTCC 2 cut(s) 441, 1438
Lsp1109I GCAGC 4 cut(s) 137, 140, 292, 301
LweI GCATC 5 cut(s) 249, 355, 535, 664, 1024
MaeI CTAG 4 cut(s) 191, 813, 1056, 1062
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 2 cut(s) 757, 917
MboII GAAGA 9 cut(s) 59, 309, 406, 411, 760, 1089, 1113, 1275, 1380
MfeI CAATTG 3 cut(s) 104, 536, 825
MflI RGATCY 2 cut(s) 396, 691
MhlI GDGCHC 1 cut(s) 446
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 5 cut(s) 616, 800, 943, 1203, 1225
MroXI GAANNNNTTC 1 cut(s) 1468
MseI TTAA 2 cut(s) 24, 99
MslI CAYNNNNRTG 5 cut(s) 340, 669, 714, 771, 888
MspA1I CMGCKG 1 cut(s) 305
MunI CAATTG 3 cut(s) 104, 536, 825
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 5 cut(s) 311, 314, 538, 710, 1266
NdeI CATATG 2 cut(s) 337, 1264
NmuCI GTSAC 1 cut(s) 917
NspI RCATGY 4 cut(s) 125, 355, 1304, 1364
PaeI GCATGC 1 cut(s) 1304
PagI TCATGA 1 cut(s) 1198
PciI ACATGT 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 1468
PfeI GAWTC 2 cut(s) 142, 1112
PkrI GCNGC 4 cut(s) 127, 130, 307, 316
PleI GAGTC 1 cut(s) 272
PmaCI CACGTG 1 cut(s) 905
PmlI CACGTG 1 cut(s) 905
PpsI GAGTC 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 905
PscI ACATGT 1 cut(s) 351
PsiI TTATAA 2 cut(s) 266, 795
PspCI CACGTG 1 cut(s) 905
PsuI RGATCY 2 cut(s) 396, 691
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 4 cut(s) 901, 1225, 1406, 1432
RsaNI GTAC 4 cut(s) 900, 1224, 1405, 1431
RseI CAYNNNNRTG 5 cut(s) 340, 669, 714, 771, 888
SaqAI TTAA 2 cut(s) 24, 99
SatI GCNGC 4 cut(s) 126, 129, 306, 315
ScaI AGTACT 1 cut(s) 1225
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 5 cut(s) 249, 355, 535, 664, 1024
SmiMI CAYNNNNRTG 5 cut(s) 340, 669, 714, 771, 888
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SpeI ACTAGT 1 cut(s) 812
SphI GCATGC 1 cut(s) 1304
SsiI CCGC 2 cut(s) 572, 620
SspMI CTAG 4 cut(s) 191, 813, 1056, 1062
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 907
TaqI TCGA 3 cut(s) 84, 655, 1485
TatI WGTACW 3 cut(s) 899, 1223, 1430
TfiI GAWTC 2 cut(s) 142, 1112
Tru1I TTAA 2 cut(s) 24, 99
Tru9I TTAA 2 cut(s) 24, 99
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 4 cut(s) 125, 128, 305, 314
Tsp45I GTSAC 1 cut(s) 917
TspGWI ACGGA 2 cut(s) 303, 1245
XapI RAATTY 1 cut(s) 1423
XbaI TCTAGA 1 cut(s) 1055
XceI RCATGY 4 cut(s) 125, 355, 1304, 1364
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 1468
XspI CTAG 4 cut(s) 191, 813, 1056, 1062
ZrmI AGTACT 1 cut(s) 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.