FvH4_4g13981
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000220
Physical Location & Seq
Forward (+)
17524803 .. 17525471
669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13981.t1

Sequence Viewer

Length: 669 bp
ATGTTATCCGGAAGAGAAGTAACTAATTCCCTCGAGGTATATCCCAATGACGAGTGGTGGTCTCGACTTGAAACTGTAACTGCCAATGGAATCAACGTACAAAGGGTATTATCTGAAGAAGTTGTTGGAAACCCAGAAGATAATTTAGACAGTGATGATGCATGGGGCGGCATAACAACTCCGGATAGTTCAGATGATGATGAAGATGGTGGAAGCGGAAAAGGTGGTGGAAATACTGGCACCGGGTTTGTATATGGACAATCTTCTACAGTTAGTGGATTGAACAATTTTTCATCTGAAGAAAATTACGATCATGCCTCCCATGATCATGGCTATAGAAGTACTAGGTATGGAGCGCAAGAGGATACCATGTATGGGAGGAGGACTAGAGGTCCAAATGATGATCAAGATGTTGCTTCAGTTGCGCTAAGTTTTAATTCTATCAGTTTAAGTAGTGGGACTGGAACCTCAAATGAATCTCAAGAAGGCAACAATCAATATGGCTATAATGTTTATGGCTATAATCAATGTGCGGAAGTCAGTGATCAGTCATCCAGTTTCCATCATCCTTACTATCCACTTATAGGGGAAACAATCGGCAGCTCCAAAGACATATATGATTATCATATTCAACACTACAATTTGTACTATATGAGTCATATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00945 ko00950 ko01100 ko01110 map00940 map00945 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

223

Amino Acids

24.39

Weight (kDa)

4.28

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 239
AccIII TCCGGA 2 cut(s) 8, 181
AciI CCGC 3 cut(s) 168, 216, 533
AcuI CTGAAG 3 cut(s) 135, 318, 402
AfaI GTAC 3 cut(s) 99, 343, 647
AfiI CCNNNNNNNGG 2 cut(s) 375, 584
AgsI TTSAA 3 cut(s) 71, 283, 632
AhdI GACNNNNNGTC 1 cut(s) 390
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 603
AluI AGCT 1 cut(s) 603
Alw26I GTCTC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 32
Aor13HI TCCGGA 2 cut(s) 8, 181
ApeKI GCWGC 1 cut(s) 600
AspLEI GCGC 2 cut(s) 358, 427
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 612
BccI CCATC 2 cut(s) 200, 570
BciVI GTATCC 1 cut(s) 358
BclI TGATCA 3 cut(s) 325, 403, 544
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 345, 387
BfmI CTRYAG 2 cut(s) 267, 334
BfuI GTATCC 1 cut(s) 358
BisI GCNGC 2 cut(s) 169, 601
BlsI GCNGC 2 cut(s) 170, 602
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 392
BmeRI GACNNNNNGTC 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 241, 466
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 66
BsaWI WCCGGW 2 cut(s) 8, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 584
Bse1I ACTGG 3 cut(s) 241, 466, 555
BseAI TCCGGA 2 cut(s) 8, 181
BseGI GGATG 2 cut(s) 551, 565
BseLI CCNNNNNNNGG 2 cut(s) 375, 584
BseNI ACTGG 3 cut(s) 241, 466, 555
BseRI GAGGAG 1 cut(s) 394
BseXI GCAGC 1 cut(s) 612
BshNI GGYRCC 1 cut(s) 239
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 3 cut(s) 9, 182, 243
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 375, 584
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 472
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 32
Bsp13I TCCGGA 2 cut(s) 8, 181
Bsp143I GATC 4 cut(s) 310, 325, 403, 544
BspACI CCGC 3 cut(s) 168, 216, 533
BspEI TCCGGA 2 cut(s) 8, 181
BspLI GGNNCC 2 cut(s) 241, 466
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 3 cut(s) 241, 466, 555
BssMI GATC 4 cut(s) 310, 325, 403, 544
Bst4CI ACNGT 3 cut(s) 76, 152, 271
Bst6I CTCTTC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 2 cut(s) 551, 565
BstHHI GCGC 2 cut(s) 358, 427
BstKTI GATC 4 cut(s) 313, 328, 406, 547
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 310, 325, 403, 544
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 267, 334
BstV1I GCAGC 1 cut(s) 612
BstXI CCANNNNNNTGG 1 cut(s) 329
BsuI GTATCC 1 cut(s) 358
BtsCI GGATG 2 cut(s) 551, 565
BtsIMutI CAGTG 2 cut(s) 157, 547
CfoI GCGC 2 cut(s) 358, 427
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 3 cut(s) 98, 342, 646
CviAII CATG 5 cut(s) 162, 314, 323, 329, 370
CviJI RGCY 4 cut(s) 333, 504, 519, 603
CviKI_1 RGCY 4 cut(s) 333, 504, 519, 603
CviQI GTAC 3 cut(s) 98, 342, 646
DdeI CTNAG 1 cut(s) 428
DpnI GATC 4 cut(s) 312, 327, 405, 546
DpnII GATC 4 cut(s) 310, 325, 403, 544
DriI GACNNNNNGTC 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 7
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 3 cut(s) 135, 318, 402
Eco88I CYCGRG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 163
FaeI CATG 5 cut(s) 165, 317, 326, 332, 373
FaqI GGGAC 1 cut(s) 472
FatI CATG 5 cut(s) 161, 313, 322, 328, 369
FauNDI CATATG 1 cut(s) 660
FbaI TGATCA 3 cut(s) 325, 403, 544
Fnu4HI GCNGC 2 cut(s) 169, 601
FokI GGATG 2 cut(s) 538, 552
Fsp4HI GCNGC 2 cut(s) 169, 601
FspBI CTAG 2 cut(s) 345, 387
GlaI GCGC 2 cut(s) 357, 426
GluI GCNGC 2 cut(s) 169, 601
HapII CCGG 3 cut(s) 9, 182, 243
HhaI GCGC 2 cut(s) 358, 427
Hin1II CATG 5 cut(s) 165, 317, 326, 332, 373
Hin6I GCGC 2 cut(s) 356, 425
HinP1I GCGC 2 cut(s) 356, 425
HinfI GANTC 3 cut(s) 90, 476, 655
HpaII CCGG 3 cut(s) 9, 182, 243
Hpy188I TCNGA 3 cut(s) 115, 193, 298
Hpy188III TCNNGA 6 cut(s) 9, 63, 182, 407, 482, 666
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 3 cut(s) 76, 152, 271
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 5 cut(s) 165, 317, 326, 332, 373
HspAI GCGC 2 cut(s) 356, 425
Kpn2I TCCGGA 2 cut(s) 8, 181
Ksp22I TGATCA 3 cut(s) 325, 403, 544
Kzo9I GATC 4 cut(s) 310, 325, 403, 544
LmnI GCTCC 2 cut(s) 353, 608
LpnPI CCDG 7 cut(s) 22, 147, 195, 222, 256, 447, 568
Lsp1109I GCAGC 1 cut(s) 612
LweI GCATC 1 cut(s) 148
MaeI CTAG 2 cut(s) 345, 387
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 19, 76
MalI GATC 4 cut(s) 312, 327, 405, 546
MboI GATC 4 cut(s) 310, 325, 403, 544
MboII GAAGA 6 cut(s) 24, 128, 149, 215, 255, 311
MluCI AATT 6 cut(s) 25, 142, 286, 304, 436, 640
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 8 cut(s) 28, 41, 328, 355, 372, 375, 383, 478
Mph1103I ATGCAT 1 cut(s) 163
MroI TCCGGA 2 cut(s) 8, 181
MseI TTAA 2 cut(s) 435, 449
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 3 cut(s) 9, 182, 243
MspR9I CCNGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 1 cut(s) 244
NdeI CATATG 1 cut(s) 660
NdeII GATC 4 cut(s) 310, 325, 403, 544
NlaIII CATG 5 cut(s) 165, 317, 326, 332, 373
NlaIV GGNNCC 2 cut(s) 241, 466
NsiI ATGCAT 1 cut(s) 163
PaeR7I CTCGAG 1 cut(s) 32
PfeI GAWTC 2 cut(s) 90, 476
PkrI GCNGC 2 cut(s) 170, 602
PleI GAGTC 1 cut(s) 663
PpsI GAGTC 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 241, 466
PspPI GGNCC 1 cut(s) 392
PspXI VCTCGAGB 1 cut(s) 32
RsaI GTAC 3 cut(s) 99, 343, 647
RsaNI GTAC 3 cut(s) 98, 342, 646
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 2 cut(s) 435, 449
SatI GCNGC 2 cut(s) 169, 601
Sau3AI GATC 4 cut(s) 310, 325, 403, 544
Sau96I GGNCC 1 cut(s) 392
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 1 cut(s) 244
SetI ASST 7 cut(s) 39, 99, 226, 350, 394, 470, 605
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 267, 334
Sfr274I CTCGAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 392
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 32, 480
SmoI CTYRAG 2 cut(s) 32, 480
Sse9I AATT 6 cut(s) 25, 142, 286, 304, 436, 640
SsiI CCGC 3 cut(s) 168, 216, 533
SspMI CTAG 2 cut(s) 345, 387
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 3 cut(s) 76, 152, 271
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 33, 64
TasI AATT 6 cut(s) 25, 142, 286, 304, 436, 640
TatI WGTACW 2 cut(s) 341, 645
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 90, 476
Tru1I TTAA 2 cut(s) 435, 449
Tru9I TTAA 2 cut(s) 435, 449
TscAI CASTG 2 cut(s) 157, 547
TseI GCWGC 1 cut(s) 600
TspDTI ATGAA 3 cut(s) 216, 282, 489
TspRI CASTG 2 cut(s) 157, 547
VpaK11BI GGWCC 1 cut(s) 392
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 2 cut(s) 345, 387
ZrmI AGTACT 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.