FvH4_3g12392

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000220
Physical Location & Seq
Reverse (-)
7369965 .. 7370501
537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12392.t1

Sequence Viewer

Length: 339 bp
ATGGCTAGTGGGGGAAGTAGAAGTGATCCTGCATGGGAGCATGGAGAACAAATTCCTAGCAACAAAAATGGTAGCATATGCAAATATTGTCGGTTGACAATGAAAAGTGGTGGAGTGACACGTCTCAAGTACCACCTAAGCGGCATGGATCCTGGAAACAATGTGTTGCGATGTGAGTCTGTTCCAACAGAAGTGAAGGCATATATTAAATCCTTATTGATGAATAAGCAAAAAGAAAAGGCAAAAAAGGCACATGTGATGGAAGAGGTTCGTGCAGAGGTTCGTGCAGAGCTTCGTGGAGAATTAATTGGCTCACAAGATGATAGTGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

113

Amino Acids

12.41

Weight (kDa)

7.72

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AclWI GGATC 3 cut(s) 20, 143, 156
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 1 cut(s) 131
AflIII ACRYGT 2 cut(s) 119, 253
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 3 cut(s) 20, 143, 156
ApoI RAATTY 1 cut(s) 51
AseI ATTAAT 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 51, 267
BamHI GGATCC 1 cut(s) 148
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 6, 57
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 153
BsgI GTGCAG 2 cut(s) 294, 306
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 25, 148
BspACI CCGC 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 3 cut(s) 20, 143, 156
BssMI GATC 2 cut(s) 25, 148
Bst2UI CCWGG 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 137
BstKTI GATC 2 cut(s) 28, 151
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 25, 148
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 130
CviAII CATG 4 cut(s) 33, 41, 145, 254
CviJI RGCY 3 cut(s) 5, 292, 312
CviKI_1 RGCY 3 cut(s) 5, 292, 312
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 137
DpnI GATC 2 cut(s) 27, 150
DpnII GATC 2 cut(s) 25, 148
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 4 cut(s) 36, 44, 148, 257
FaiI YATR 8 cut(s) 34, 42, 77, 79, 146, 202, 204, 255
FatI CATG 4 cut(s) 32, 40, 144, 253
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 2 cut(s) 6, 57
GluI GCNGC 1 cut(s) 142
Hin1II CATG 4 cut(s) 36, 44, 148, 257
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 32, 81, 275, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 4 cut(s) 36, 44, 148, 257
Kzo9I GATC 2 cut(s) 25, 148
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 42, 138, 165
MaeI CTAG 2 cut(s) 6, 57
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 27, 150
MboI GATC 2 cut(s) 25, 148
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 148
MluCI AATT 3 cut(s) 51, 302, 306
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 259, 271
MroXI GAANNNNTTC 2 cut(s) 51, 267
MseI TTAA 2 cut(s) 207, 305
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeI CATATG 1 cut(s) 77
NdeII GATC 2 cut(s) 25, 148
NlaIII CATG 4 cut(s) 36, 44, 148, 257
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 257
PciI ACATGT 1 cut(s) 253
PdmI GAANNNNTTC 2 cut(s) 51, 267
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PscI ACATGT 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 207, 305
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 2 cut(s) 25, 148
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 153
SetI ASST 5 cut(s) 124, 138, 270, 282, 294
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 51, 302, 306
SsiI CCGC 1 cut(s) 141
SspI AATATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 6, 57
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 124
TasI AATT 3 cut(s) 51, 302, 306
TauI GCSGC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 207, 305
Tru9I TTAA 2 cut(s) 207, 305
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 116, 236
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 257
XmnI GAANNNNTTC 2 cut(s) 51, 267
XspI CTAG 2 cut(s) 6, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.