FvH4_7g02741

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000220
Physical Location & Seq
Forward (+)
3051230 .. 3052751
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02741.t2

Sequence Viewer

Length: 792 bp
ATGCCGGCAGCCATTGCATCAAGATCAGAGATGTCTCCAACCGACTGGTGGGTTATGTATGGGAGTAGTGCCCCAACTGTGAGAACGTTAGCTATCAAAGTATTATCACAAACAGCATCAGCATCTACGTGTGAGAGAAACTGGAGCACATTCGCATTAATCCATACTAAGCAGAGAAACAGGTTGGGGTATAGTCGTTTGGAAAAATTGGTTTTTTGCTATTACAACATGAGGCTTAAAATTCGAGACAGAGAGCCAGCTTATTCGCATGTGGACCAGAAAGATCCATTAGATGTCTTTGATATTGGTACAGAGTTTGATGATGAAGCAATAGATCAACTTTGTGAATGGATAAGGCCACTTCATCTTGATGACGAGGAACGCAATCCATCACCTACAGTTGCTCGTGAAGCACGTGCGGAAGGAATAAATGTAGAAAGAGTAATTCAAGAAGAGGTTATAGGTCCTGATAGAGAATCTATCGATGCATTAGTGGGTAGAGCTAACATTCTAATTTCCTCTCGTAGCTCACAAGTTCCTTCCAGGACAAACGAAAACTCTAGCACCAGATCAGGAGGCTCATCAAGCATCAGGGGTGATGATAGTGGAAGCTACGGCGGTGGTGGAGATGATGTTGGAGTTCAAGATTACAATGGGAGCCAACCTGGTCATATGAGCCCATTCACTTGTGAGCCAAACTTCACACATGCAACACAAGATGGTGATCATGGAAGTAGGAGAGCAGTGTGGGAGGAGGCAATGATGGACCATACACTTATGGCCAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

264

Amino Acids

29.27

Weight (kDa)

5.05

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 107 - 176 1.1e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 419, 618
AclI AACGTT 1 cut(s) 86
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 1 cut(s) 240
AcvI CACGTG 1 cut(s) 416
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 449, 644
AjnI CCWGG 2 cut(s) 542, 664
AluBI AGCT 5 cut(s) 92, 260, 503, 528, 612
AluI AGCT 5 cut(s) 92, 260, 503, 528, 612
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 39, 240
AlwI GGATC 1 cut(s) 278
AoxI GGCC 2 cut(s) 356, 780
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 240
AseI ATTAAT 1 cut(s) 158
AspS9I GGNCC 3 cut(s) 274, 464, 766
AsuHPI GGTGA 3 cut(s) 384, 608, 734
AvaII GGWCC 3 cut(s) 274, 464, 766
BaeGI GKGCMC 1 cut(s) 73
BalI TGGCCA 1 cut(s) 782
BanII GRGCYC 1 cut(s) 680
BauI CACGAG 1 cut(s) 405
BbrPI CACGTG 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 20
BccI CCATC 3 cut(s) 397, 713, 757
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 2 cut(s) 544, 666
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 39, 240
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 544, 666
Bme18I GGWCC 3 cut(s) 274, 464, 766
BmgT120I GGNCC 3 cut(s) 274, 464, 766
BmiI GGNNCC 1 cut(s) 659
BmrFI CCNGG 2 cut(s) 544, 666
BmsI GCATC 5 cut(s) 26, 125, 131, 475, 597
BpmI CTGGAG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 2 cut(s) 129, 416
BsaBI GATNNNNATC 1 cut(s) 723
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 50, 146
Bse3DI GCAATG 2 cut(s) 12, 765
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 2 cut(s) 544, 666
BseCI ATCGAT 1 cut(s) 483
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 12, 765
BseNI ACTGG 2 cut(s) 50, 146
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 2 cut(s) 358, 782
BshVI ATCGAT 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 39, 240
BsnI GGCC 2 cut(s) 358, 782
Bsp1286I GDGCHC 3 cut(s) 73, 149, 680
Bsp143I GATC 5 cut(s) 23, 283, 334, 569, 724
BspACI CCGC 2 cut(s) 419, 618
BspANI GGCC 2 cut(s) 358, 782
BspDI ATCGAT 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 659
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 12, 765
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 50, 146
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 5 cut(s) 23, 283, 334, 569, 724
BssSI CACGAG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 544, 666
Bst4CI ACNGT 2 cut(s) 79, 400
Bst6I CTCTTC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 14
BstBAI YACGTR 2 cut(s) 129, 416
BstC8I GCNNGC 2 cut(s) 6, 258
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 5 cut(s) 26, 286, 337, 572, 727
BstMAI GTCTC 2 cut(s) 39, 240
BstMBI GATC 5 cut(s) 23, 283, 334, 569, 724
BstMWI GCNNNNNNNGC 3 cut(s) 14, 410, 585
BstNI CCWGG 2 cut(s) 544, 666
BstNSI RCATGY 2 cut(s) 272, 710
BstSCI CCNGG 2 cut(s) 542, 664
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 45
BstYI RGATCY 1 cut(s) 283
Bsu15I ATCGAT 1 cut(s) 483
BsuRI GGCC 2 cut(s) 358, 782
BsuTUI ATCGAT 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 1 cut(s) 750
Cac8I GCNNGC 2 cut(s) 6, 258
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 3 cut(s) 274, 464, 766
ClaI ATCGAT 1 cut(s) 483
CsiI ACCWGGT 1 cut(s) 664
Csp6I GTAC 1 cut(s) 309
CviAII CATG 4 cut(s) 229, 269, 707, 728
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 1 cut(s) 168
DpnI GATC 5 cut(s) 25, 285, 336, 571, 726
DpnII GATC 5 cut(s) 23, 283, 334, 569, 724
EaeI YGGCCR 1 cut(s) 780
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 680
Eco47I GGWCC 3 cut(s) 274, 464, 766
Eco72I CACGTG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 542, 664
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 680
FaeI CATG 4 cut(s) 232, 272, 710, 731
FatI CATG 4 cut(s) 228, 268, 706, 727
FauNDI CATATG 1 cut(s) 672
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 1 cut(s) 9
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 561
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 2 cut(s) 358, 782
HapII CCGG 1 cut(s) 5
Hin1II CATG 4 cut(s) 232, 272, 710, 731
HinfI GANTC 1 cut(s) 476
HpaII CCGG 1 cut(s) 5
HphI GGTGA 3 cut(s) 384, 608, 734
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 28, 791
Hpy188III TCNNGA 8 cut(s) 21, 245, 368, 407, 449, 467, 573, 644
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 416, 549
HpyCH4III ACNGT 2 cut(s) 79, 400
HpyCH4IV ACGT 3 cut(s) 86, 128, 415
HpyCH4V TGCA 3 cut(s) 17, 488, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 410, 585
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 3 cut(s) 86, 128, 415
Hsp92II CATG 4 cut(s) 232, 272, 710, 731
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 5 cut(s) 23, 283, 334, 569, 724
LmnI GCTCC 2 cut(s) 144, 657
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 5 cut(s) 26, 125, 131, 475, 597
MabI ACCWGGT 1 cut(s) 664
MaeI CTAG 1 cut(s) 561
MaeII ACGT 3 cut(s) 86, 128, 415
MalI GATC 5 cut(s) 25, 285, 336, 571, 726
MboI GATC 5 cut(s) 23, 283, 334, 569, 724
MboII GAAGA 1 cut(s) 464
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 3 cut(s) 73, 149, 680
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 4 cut(s) 206, 240, 444, 513
MluNI TGGCCA 1 cut(s) 782
MmeI TCCRAC 2 cut(s) 62, 616
MnlI CCTC 7 cut(s) 225, 370, 448, 529, 569, 745, 748
Mox20I TGGCCA 1 cut(s) 782
Mph1103I ATGCAT 1 cut(s) 490
MroNI GCCGGC 1 cut(s) 4
MscI TGGCCA 1 cut(s) 782
MseI TTAA 2 cut(s) 158, 237
MslI CAYNNNNRTG 2 cut(s) 127, 369
Msp20I TGGCCA 1 cut(s) 782
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 544, 666
MvaI CCWGG 2 cut(s) 544, 666
MwoI GCNNNNNNNGC 3 cut(s) 14, 410, 585
NaeI GCCGGC 1 cut(s) 6
NdeI CATATG 1 cut(s) 672
NdeII GATC 5 cut(s) 23, 283, 334, 569, 724
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 232, 272, 710, 731
NlaIV GGNNCC 1 cut(s) 659
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 2 cut(s) 272, 710
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 476
PfoI TCCNGGA 1 cut(s) 542
PkrI GCNGC 1 cut(s) 10
PmaCI CACGTG 1 cut(s) 416
PmlI CACGTG 1 cut(s) 416
Ppu21I YACGTR 2 cut(s) 129, 416
PpuMI RGGWCCY 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 158
Psp1406I AACGTT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 542, 664
PspCI CACGTG 1 cut(s) 416
PspGI CCWGG 2 cut(s) 542, 664
PspN4I GGNNCC 1 cut(s) 659
PspPI GGNCC 3 cut(s) 274, 464, 766
PspPPI RGGWCCY 1 cut(s) 464
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 2 cut(s) 127, 369
SaqAI TTAA 2 cut(s) 158, 237
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 5 cut(s) 23, 283, 334, 569, 724
Sau96I GGNCC 3 cut(s) 274, 464, 766
ScrFI CCNGG 2 cut(s) 544, 666
SduI GDGCHC 3 cut(s) 73, 149, 680
SexAI ACCWGGT 1 cut(s) 664
SfaNI GCATC 5 cut(s) 26, 125, 131, 475, 597
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 3 cut(s) 274, 464, 766
SmiMI CAYNNNNRTG 2 cut(s) 127, 369
Sse9I AATT 4 cut(s) 206, 240, 444, 513
SsiI CCGC 2 cut(s) 419, 618
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 542, 664
TaaI ACNGT 2 cut(s) 79, 400
TaiI ACGT 3 cut(s) 89, 131, 418
TaqI TCGA 2 cut(s) 244, 483
TasI AATT 4 cut(s) 206, 240, 444, 513
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 2 cut(s) 158, 237
Tru9I TTAA 2 cut(s) 158, 237
TscAI CASTG 1 cut(s) 750
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 339, 353
TspRI CASTG 1 cut(s) 750
VpaK11BI GGWCC 3 cut(s) 274, 464, 766
VspI ATTAAT 1 cut(s) 158
XapI RAATTY 1 cut(s) 240
XceI RCATGY 2 cut(s) 272, 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 45
XspI CTAG 1 cut(s) 561
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.